Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3383 and GFF3384 are separated by 278 nucleotides GFF3384 and GFF3385 are separated by 111 nucleotides GFF3385 and GFF3386 are separated by 77 nucleotides
GFF3383 - hypothetical protein, at 227,069 to 228,871
GFF3383
GFF3384 - hypothetical protein, at 229,150 to 229,581
GFF3384
GFF3385 - Succinyl-diaminopimelate desuccinylase, at 229,693 to 231,084
GFF3385
GFF3386 - Zinc transport protein ZntB, at 231,162 to 232,157
GFF3386
Position (kb) 229
230
231
232 Strain fitness (log2 ratio) -1
0
1 at 229.194 kb on + strand, within GFF3384 at 229.195 kb on - strand, within GFF3384 at 229.195 kb on - strand, within GFF3384 at 229.523 kb on + strand, within GFF3384 at 229.951 kb on + strand, within GFF3385 at 229.952 kb on - strand, within GFF3385 at 229.952 kb on - strand, within GFF3385 at 229.960 kb on + strand, within GFF3385 at 229.961 kb on - strand, within GFF3385 at 229.961 kb on - strand, within GFF3385 at 229.961 kb on - strand, within GFF3385 at 229.961 kb on - strand, within GFF3385 at 230.458 kb on + strand, within GFF3385 at 230.458 kb on + strand, within GFF3385 at 230.638 kb on + strand, within GFF3385 at 230.639 kb on - strand, within GFF3385 at 230.640 kb on + strand, within GFF3385 at 231.013 kb on + strand at 231.013 kb on + strand at 231.013 kb on + strand at 231.014 kb on - strand at 231.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 229,194 + GFF3384 0.10 -1.2 229,195 - GFF3384 0.10 -0.8 229,195 - GFF3384 0.10 -1.3 229,523 + GFF3384 0.86 +0.1 229,951 + GFF3385 0.19 +1.0 229,952 - GFF3385 0.19 -0.2 229,952 - GFF3385 0.19 -0.3 229,960 + GFF3385 0.19 -0.4 229,961 - GFF3385 0.19 +0.2 229,961 - GFF3385 0.19 +0.6 229,961 - GFF3385 0.19 +0.6 229,961 - GFF3385 0.19 +0.6 230,458 + GFF3385 0.55 -1.2 230,458 + GFF3385 0.55 -1.5 230,638 + GFF3385 0.68 +0.0 230,639 - GFF3385 0.68 +1.0 230,640 + GFF3385 0.68 +0.6 231,013 + +0.2 231,013 + +0.4 231,013 + +0.2 231,014 - -0.1 231,141 - -0.8
Or see this region's nucleotide sequence