Strain Fitness in Xanthobacter sp. DMC5 around GFF3358

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3357 and GFF3358 are separated by 157 nucleotidesGFF3358 and GFF3359 are separated by 19 nucleotides GFF3357 - Citrate lyase subunit beta, at 200,852 to 201,793 GFF3357 GFF3358 - putative protein YisK, at 201,951 to 202,952 GFF3358 GFF3359 - hypothetical protein, at 202,972 to 204,159 GFF3359 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 201.321 kb on - strand, within GFF3357at 201.429 kb on - strand, within GFF3357at 201.474 kb on + strand, within GFF3357at 201.475 kb on - strand, within GFF3357at 201.491 kb on + strand, within GFF3357at 201.492 kb on - strand, within GFF3357at 201.492 kb on - strand, within GFF3357at 201.492 kb on - strand, within GFF3357at 201.526 kb on + strand, within GFF3357at 201.552 kb on - strand, within GFF3357at 201.552 kb on - strand, within GFF3357at 201.725 kb on + strandat 201.893 kb on + strandat 201.893 kb on + strandat 201.893 kb on + strandat 201.894 kb on - strandat 201.894 kb on - strandat 201.894 kb on - strandat 201.953 kb on - strandat 201.953 kb on - strandat 202.141 kb on + strand, within GFF3358at 202.141 kb on + strand, within GFF3358at 202.141 kb on + strand, within GFF3358at 202.142 kb on - strand, within GFF3358at 202.260 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.537 kb on + strand, within GFF3358at 202.537 kb on + strand, within GFF3358at 202.538 kb on - strand, within GFF3358at 202.538 kb on - strand, within GFF3358at 202.870 kb on + strandat 202.871 kb on - strandat 202.871 kb on - strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.937 kb on - strandat 202.937 kb on - strandat 202.937 kb on - strandat 202.937 kb on - strandat 203.051 kb on + strandat 203.052 kb on - strandat 203.052 kb on - strandat 203.102 kb on + strand, within GFF3359at 203.102 kb on + strand, within GFF3359at 203.103 kb on - strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.250 kb on + strand, within GFF3359at 203.250 kb on + strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.283 kb on - strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.343 kb on - strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.663 kb on - strand, within GFF3359at 203.669 kb on + strand, within GFF3359at 203.726 kb on + strand, within GFF3359

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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201,321 - GFF3357 0.50 -0.5
201,429 - GFF3357 0.61 +0.6
201,474 + GFF3357 0.66 +0.0
201,475 - GFF3357 0.66 +0.2
201,491 + GFF3357 0.68 +0.4
201,492 - GFF3357 0.68 -0.2
201,492 - GFF3357 0.68 +0.4
201,492 - GFF3357 0.68 +0.9
201,526 + GFF3357 0.72 -1.2
201,552 - GFF3357 0.74 -0.2
201,552 - GFF3357 0.74 +0.5
201,725 + -0.3
201,893 + -0.9
201,893 + -0.3
201,893 + +0.4
201,894 - -0.3
201,894 - -0.3
201,894 - -0.6
201,953 - -0.9
201,953 - -0.4
202,141 + GFF3358 0.19 -0.9
202,141 + GFF3358 0.19 -1.1
202,141 + GFF3358 0.19 +0.3
202,142 - GFF3358 0.19 +0.4
202,260 + GFF3358 0.31 -2.4
202,378 + GFF3358 0.43 +0.0
202,378 + GFF3358 0.43 +1.9
202,378 + GFF3358 0.43 +0.4
202,534 + GFF3358 0.58 -0.1
202,534 + GFF3358 0.58 -0.6
202,534 + GFF3358 0.58 +0.5
202,534 + GFF3358 0.58 -0.6
202,535 - GFF3358 0.58 -0.4
202,535 - GFF3358 0.58 -0.2
202,535 - GFF3358 0.58 +0.3
202,537 + GFF3358 0.58 -0.2
202,537 + GFF3358 0.58 -0.5
202,538 - GFF3358 0.59 +0.4
202,538 - GFF3358 0.59 +0.8
202,870 + -0.5
202,871 - -0.1
202,871 - -0.3
202,936 + -0.6
202,936 + +0.8
202,936 + -0.1
202,936 + +0.2
202,937 - -0.3
202,937 - +0.3
202,937 - +0.3
202,937 - -0.3
203,051 + +0.1
203,052 - -0.4
203,052 - -1.1
203,102 + GFF3359 0.11 +0.0
203,102 + GFF3359 0.11 -0.6
203,103 - GFF3359 0.11 -0.1
203,105 + GFF3359 0.11 +0.5
203,105 + GFF3359 0.11 +1.2
203,105 + GFF3359 0.11 +0.5
203,106 - GFF3359 0.11 -0.9
203,106 - GFF3359 0.11 +1.5
203,106 - GFF3359 0.11 -0.1
203,106 - GFF3359 0.11 -0.5
203,250 + GFF3359 0.23 -0.4
203,250 + GFF3359 0.23 +1.6
203,251 - GFF3359 0.23 +0.9
203,251 - GFF3359 0.23 +1.0
203,252 + GFF3359 0.24 -1.0
203,252 + GFF3359 0.24 -1.4
203,252 + GFF3359 0.24 +0.9
203,252 + GFF3359 0.24 +0.1
203,252 + GFF3359 0.24 -0.7
203,253 - GFF3359 0.24 +0.1
203,253 - GFF3359 0.24 -0.7
203,253 - GFF3359 0.24 -1.7
203,253 - GFF3359 0.24 +0.4
203,283 - GFF3359 0.26 -0.0
203,342 + GFF3359 0.31 -0.4
203,342 + GFF3359 0.31 -0.9
203,342 + GFF3359 0.31 -0.5
203,343 - GFF3359 0.31 -0.9
203,360 + GFF3359 0.33 +0.6
203,360 + GFF3359 0.33 -0.2
203,360 + GFF3359 0.33 -0.3
203,360 + GFF3359 0.33 -1.1
203,360 + GFF3359 0.33 +0.7
203,361 - GFF3359 0.33 -0.2
203,361 - GFF3359 0.33 +0.1
203,663 - GFF3359 0.58 +0.4
203,669 + GFF3359 0.59 -1.4
203,726 + GFF3359 0.63 +0.2

Or see this region's nucleotide sequence