Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3352 and GFF3353 overlap by 1 nucleotides GFF3353 and GFF3354 overlap by 4 nucleotides GFF3354 and GFF3355 are separated by 148 nucleotides
GFF3352 - hypothetical protein, at 196,066 to 196,986
GFF3352
GFF3353 - hypothetical protein, at 196,986 to 197,567
GFF3353
GFF3354 - hypothetical protein, at 197,564 to 198,790
GFF3354
GFF3355 - Nitrilotriacetate monooxygenase component A, at 198,939 to 200,258
GFF3355
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.681 kb on + strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.682 kb on - strand, within GFF3352 at 196.683 kb on + strand, within GFF3352 at 196.684 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.721 kb on - strand, within GFF3352 at 196.727 kb on - strand, within GFF3352 at 196.901 kb on + strand at 196.901 kb on + strand at 196.901 kb on + strand at 196.902 kb on - strand at 197.031 kb on + strand at 197.031 kb on + strand at 197.032 kb on - strand at 197.127 kb on + strand, within GFF3353 at 197.176 kb on - strand, within GFF3353 at 197.223 kb on + strand, within GFF3353 at 197.224 kb on - strand, within GFF3353 at 197.715 kb on - strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.305 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354 at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.785 kb on - strand at 198.785 kb on - strand at 199.050 kb on + strand at 199.050 kb on + strand at 199.051 kb on - strand at 199.051 kb on - strand at 199.192 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.275 kb on + strand, within GFF3355 at 199.276 kb on - strand, within GFF3355 at 199.411 kb on - strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.504 kb on - strand, within GFF3355 at 199.504 kb on - strand, within GFF3355 at 199.527 kb on + strand, within GFF3355
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 196,681 + GFF3352 0.67 +0.5 196,681 + GFF3352 0.67 +0.4 196,681 + GFF3352 0.67 -0.1 196,681 + GFF3352 0.67 +1.5 196,681 + GFF3352 0.67 -1.1 196,682 - GFF3352 0.67 +0.1 196,682 - GFF3352 0.67 +0.8 196,682 - GFF3352 0.67 +1.0 196,683 + GFF3352 0.67 +0.4 196,684 - GFF3352 0.67 +0.5 196,721 - GFF3352 0.71 +0.7 196,721 - GFF3352 0.71 -1.6 196,721 - GFF3352 0.71 -0.7 196,721 - GFF3352 0.71 -1.4 196,721 - GFF3352 0.71 -0.0 196,727 - GFF3352 0.72 -0.1 196,901 + -0.2 196,901 + +1.2 196,901 + +0.4 196,902 - -0.0 197,031 + -0.3 197,031 + +0.3 197,032 - +0.9 197,127 + GFF3353 0.24 +0.5 197,176 - GFF3353 0.33 +0.2 197,223 + GFF3353 0.41 +0.4 197,224 - GFF3353 0.41 -0.5 197,715 - GFF3354 0.12 -2.1 198,188 + GFF3354 0.51 -1.0 198,188 + GFF3354 0.51 -0.3 198,188 + GFF3354 0.51 -0.0 198,305 + GFF3354 0.60 +0.2 198,407 + GFF3354 0.69 -0.4 198,407 + GFF3354 0.69 +0.6 198,407 + GFF3354 0.69 +0.5 198,407 + GFF3354 0.69 -0.3 198,407 + GFF3354 0.69 -0.5 198,408 - GFF3354 0.69 -0.1 198,408 - GFF3354 0.69 +0.4 198,408 - GFF3354 0.69 -0.8 198,408 - GFF3354 0.69 -0.4 198,447 - GFF3354 0.72 +1.2 198,447 - GFF3354 0.72 +0.3 198,784 + -0.7 198,784 + -0.2 198,784 + -0.2 198,784 + -0.6 198,784 + +1.8 198,785 - -0.2 198,785 - -1.1 199,050 + +1.1 199,050 + -0.1 199,051 - +0.8 199,051 - -0.6 199,192 + GFF3355 0.19 +0.5 199,263 + GFF3355 0.25 +0.7 199,263 + GFF3355 0.25 +0.8 199,263 + GFF3355 0.25 -1.9 199,275 + GFF3355 0.25 -1.8 199,276 - GFF3355 0.26 +0.2 199,411 - GFF3355 0.36 +0.3 199,503 + GFF3355 0.43 +0.4 199,503 + GFF3355 0.43 +0.5 199,503 + GFF3355 0.43 -0.9 199,503 + GFF3355 0.43 +0.1 199,503 + GFF3355 0.43 -1.1 199,504 - GFF3355 0.43 -0.1 199,504 - GFF3355 0.43 +0.2 199,527 + GFF3355 0.45 +0.3
Or see this region's nucleotide sequence