Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3319 and GFF3320 are separated by 48 nucleotides GFF3320 and GFF3321 are separated by 11 nucleotides GFF3321 and GFF3322 are separated by 92 nucleotides
GFF3319 - hypothetical protein, at 159,527 to 160,222
GFF3319
GFF3320 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 160,271 to 161,056
GFF3320
GFF3321 - L-2-keto-3-deoxyarabonate dehydratase, at 161,068 to 161,997
GFF3321
GFF3322 - HTH-type transcriptional regulator KipR, at 162,090 to 162,824
GFF3322
Position (kb) 161
162 Strain fitness (log2 ratio) -1
0
1
2 at 160.151 kb on + strand, within GFF3319 at 160.151 kb on + strand, within GFF3319 at 160.151 kb on + strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.166 kb on + strand at 160.167 kb on - strand at 160.543 kb on + strand, within GFF3320 at 160.544 kb on - strand, within GFF3320 at 160.961 kb on + strand, within GFF3320 at 160.961 kb on + strand, within GFF3320 at 160.962 kb on - strand, within GFF3320 at 160.962 kb on - strand, within GFF3320 at 161.003 kb on + strand at 161.004 kb on - strand at 161.004 kb on - strand at 161.004 kb on - strand at 161.173 kb on + strand, within GFF3321 at 161.174 kb on - strand, within GFF3321 at 161.428 kb on + strand, within GFF3321 at 161.429 kb on - strand, within GFF3321 at 161.432 kb on - strand, within GFF3321 at 161.432 kb on - strand, within GFF3321 at 161.720 kb on - strand, within GFF3321 at 161.821 kb on + strand, within GFF3321 at 161.860 kb on + strand, within GFF3321 at 161.860 kb on + strand, within GFF3321 at 161.860 kb on + strand, within GFF3321 at 161.861 kb on - strand, within GFF3321 at 161.950 kb on + strand at 161.950 kb on + strand at 161.950 kb on + strand at 161.951 kb on - strand at 161.951 kb on - strand at 161.951 kb on - strand at 162.392 kb on - strand, within GFF3322 at 162.481 kb on + strand, within GFF3322 at 162.482 kb on - strand, within GFF3322 at 162.544 kb on + strand, within GFF3322 at 162.656 kb on - strand, within GFF3322 at 162.656 kb on - strand, within GFF3322 at 162.683 kb on - strand, within GFF3322
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 160,151 + GFF3319 0.90 -1.0 160,151 + GFF3319 0.90 -0.3 160,151 + GFF3319 0.90 -1.0 160,152 - GFF3319 0.90 +0.0 160,152 - GFF3319 0.90 +0.7 160,152 - GFF3319 0.90 -0.9 160,152 - GFF3319 0.90 -0.7 160,166 + -0.6 160,167 - +0.2 160,543 + GFF3320 0.35 -0.5 160,544 - GFF3320 0.35 +0.3 160,961 + GFF3320 0.88 -0.3 160,961 + GFF3320 0.88 +0.2 160,962 - GFF3320 0.88 -0.1 160,962 - GFF3320 0.88 +0.7 161,003 + -0.0 161,004 - +1.5 161,004 - -0.3 161,004 - -0.2 161,173 + GFF3321 0.11 +0.1 161,174 - GFF3321 0.11 +0.5 161,428 + GFF3321 0.39 +0.6 161,429 - GFF3321 0.39 +0.4 161,432 - GFF3321 0.39 -0.7 161,432 - GFF3321 0.39 +0.2 161,720 - GFF3321 0.70 +0.2 161,821 + GFF3321 0.81 -0.6 161,860 + GFF3321 0.85 +0.5 161,860 + GFF3321 0.85 -0.7 161,860 + GFF3321 0.85 -0.4 161,861 - GFF3321 0.85 -0.0 161,950 + -1.6 161,950 + -0.6 161,950 + +0.1 161,951 - -1.2 161,951 - +0.3 161,951 - +1.6 162,392 - GFF3322 0.41 +2.4 162,481 + GFF3322 0.53 +0.5 162,482 - GFF3322 0.53 +1.1 162,544 + GFF3322 0.62 -0.3 162,656 - GFF3322 0.77 -1.6 162,656 - GFF3322 0.77 -0.5 162,683 - GFF3322 0.81 -0.4
Or see this region's nucleotide sequence