Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3108 and GFF3109 are separated by 4 nucleotides GFF3109 and GFF3110 are separated by 27 nucleotides GFF3110 and GFF3111 are separated by 18 nucleotides GFF3111 and GFF3112 overlap by 23 nucleotides
GFF3108 - Type II secretion system protein E, at 838,586 to 840,259
GFF3108
GFF3109 - Putative type II secretion system protein F, at 840,264 to 841,472
GFF3109
GFF3110 - Type II secretion system protein G, at 841,500 to 841,952
GFF3110
GFF3111 - hypothetical protein, at 841,971 to 842,444
GFF3111
GFF3112 - hypothetical protein, at 842,422 to 842,832
GFF3112
Position (kb) 840
841
842 Strain fitness (log2 ratio) -2
-1
0
1 at 839.621 kb on + strand, within GFF3108 at 839.621 kb on + strand, within GFF3108 at 839.622 kb on - strand, within GFF3108 at 840.017 kb on + strand, within GFF3108 at 840.402 kb on + strand, within GFF3109 at 840.651 kb on + strand, within GFF3109 at 840.652 kb on - strand, within GFF3109 at 840.771 kb on + strand, within GFF3109 at 841.421 kb on + strand at 841.421 kb on + strand at 841.422 kb on - strand at 841.422 kb on - strand at 841.422 kb on - strand at 841.633 kb on - strand, within GFF3110 at 841.704 kb on + strand, within GFF3110 at 841.705 kb on - strand, within GFF3110 at 841.794 kb on + strand, within GFF3110 at 841.795 kb on - strand, within GFF3110 at 841.795 kb on - strand, within GFF3110 at 841.839 kb on + strand, within GFF3110 at 841.839 kb on + strand, within GFF3110 at 841.839 kb on + strand, within GFF3110 at 841.840 kb on - strand, within GFF3110 at 841.840 kb on - strand, within GFF3110 at 841.845 kb on + strand, within GFF3110 at 841.846 kb on - strand, within GFF3110 at 841.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 839,621 + GFF3108 0.62 +0.6 839,621 + GFF3108 0.62 +0.0 839,622 - GFF3108 0.62 +0.5 840,017 + GFF3108 0.85 +0.1 840,402 + GFF3109 0.11 +1.2 840,651 + GFF3109 0.32 -0.1 840,652 - GFF3109 0.32 -1.3 840,771 + GFF3109 0.42 +0.3 841,421 + -0.8 841,421 + -0.8 841,422 - -0.6 841,422 - +0.2 841,422 - -0.0 841,633 - GFF3110 0.29 +0.4 841,704 + GFF3110 0.45 +0.1 841,705 - GFF3110 0.45 -2.0 841,794 + GFF3110 0.65 +0.7 841,795 - GFF3110 0.65 -1.1 841,795 - GFF3110 0.65 -0.0 841,839 + GFF3110 0.75 -0.7 841,839 + GFF3110 0.75 +0.4 841,839 + GFF3110 0.75 -0.1 841,840 - GFF3110 0.75 +0.1 841,840 - GFF3110 0.75 -0.8 841,845 + GFF3110 0.76 -0.7 841,846 - GFF3110 0.76 -0.7 841,987 - -0.9
Or see this region's nucleotide sequence