Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3015 and GFF3016 are separated by 243 nucleotides GFF3016 and GFF3017 are separated by 147 nucleotides GFF3017 and GFF3018 are separated by 19 nucleotides
GFF3015 - High-affinity branched-chain amino acid transport system permease protein LivH, at 739,439 to 740,299
GFF3015
GFF3016 - Leu/Ile/Val-binding protein, at 740,543 to 741,793
GFF3016
GFF3017 - HTH-type transcriptional repressor RspR, at 741,941 to 742,624
GFF3017
GFF3018 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 742,644 to 744,164
GFF3018
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 739.552 kb on - strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 740.157 kb on + strand, within GFF3015 at 740.158 kb on - strand, within GFF3015 at 740.158 kb on - strand, within GFF3015 at 740.344 kb on + strand at 740.345 kb on - strand at 740.507 kb on + strand at 740.583 kb on + strand at 740.584 kb on - strand at 740.616 kb on + strand at 740.617 kb on - strand at 740.617 kb on - strand at 740.643 kb on + strand at 740.859 kb on + strand, within GFF3016 at 740.860 kb on - strand, within GFF3016 at 740.874 kb on + strand, within GFF3016 at 740.875 kb on - strand, within GFF3016 at 740.895 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.067 kb on - strand, within GFF3016 at 741.067 kb on - strand, within GFF3016 at 741.111 kb on + strand, within GFF3016 at 741.147 kb on + strand, within GFF3016 at 741.147 kb on + strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.310 kb on - strand, within GFF3016 at 741.442 kb on - strand, within GFF3016 at 741.618 kb on + strand, within GFF3016 at 741.970 kb on + strand at 742.010 kb on + strand, within GFF3017 at 742.343 kb on + strand, within GFF3017
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 739,552 - GFF3015 0.13 -0.1 739,569 + GFF3015 0.15 -0.7 739,569 + GFF3015 0.15 -0.9 739,569 + GFF3015 0.15 +2.2 740,157 + GFF3015 0.83 -0.7 740,158 - GFF3015 0.84 +0.6 740,158 - GFF3015 0.84 -2.2 740,344 + -0.0 740,345 - -0.9 740,507 + -0.3 740,583 + -0.1 740,584 - +0.9 740,616 + -1.4 740,617 - -0.2 740,617 - +0.3 740,643 + +0.6 740,859 + GFF3016 0.25 +0.2 740,860 - GFF3016 0.25 -0.5 740,874 + GFF3016 0.26 -0.7 740,875 - GFF3016 0.27 +0.8 740,895 + GFF3016 0.28 +0.1 741,066 + GFF3016 0.42 -0.4 741,066 + GFF3016 0.42 -1.3 741,066 + GFF3016 0.42 +1.3 741,067 - GFF3016 0.42 +0.1 741,067 - GFF3016 0.42 -0.9 741,111 + GFF3016 0.45 +0.4 741,147 + GFF3016 0.48 -0.7 741,147 + GFF3016 0.48 +0.4 741,148 - GFF3016 0.48 -0.6 741,148 - GFF3016 0.48 +0.2 741,148 - GFF3016 0.48 +0.2 741,148 - GFF3016 0.48 +0.2 741,148 - GFF3016 0.48 +0.0 741,148 - GFF3016 0.48 +2.6 741,310 - GFF3016 0.61 -0.3 741,442 - GFF3016 0.72 +0.7 741,618 + GFF3016 0.86 -0.4 741,970 + +0.2 742,010 + GFF3017 0.10 -0.4 742,343 + GFF3017 0.59 -2.0
Or see this region's nucleotide sequence