Strain Fitness in Xanthobacter sp. DMC5 around GFF2926

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2924 and GFF2925 are separated by 8 nucleotidesGFF2925 and GFF2926 overlap by 1 nucleotidesGFF2926 and GFF2927 overlap by 8 nucleotidesGFF2927 and GFF2928 are separated by 4 nucleotides GFF2924 - Sarcosine oxidase subunit beta, at 644,022 to 645,275 GFF2924 GFF2925 - Sarcosine oxidase subunit delta, at 645,284 to 645,571 GFF2925 GFF2926 - Sarcosine oxidase subunit alpha, at 645,571 to 648,576 GFF2926 GFF2927 - hypothetical protein, at 648,569 to 649,126 GFF2927 GFF2928 - hypothetical protein, at 649,131 to 649,805 GFF2928 Position (kb) 645 646 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 644.744 kb on + strand, within GFF2924at 644.744 kb on + strand, within GFF2924at 644.744 kb on + strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.871 kb on + strand, within GFF2924at 644.872 kb on - strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.926 kb on - strand, within GFF2924at 644.926 kb on - strand, within GFF2924at 644.934 kb on + strand, within GFF2924at 644.935 kb on - strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.100 kb on - strand, within GFF2924at 645.100 kb on - strand, within GFF2924at 645.306 kb on - strandat 645.407 kb on + strand, within GFF2925at 645.407 kb on + strand, within GFF2925at 645.408 kb on - strand, within GFF2925at 645.408 kb on - strand, within GFF2925at 645.527 kb on + strand, within GFF2925at 645.527 kb on + strand, within GFF2925at 645.528 kb on - strand, within GFF2925at 645.661 kb on + strandat 645.662 kb on - strandat 645.662 kb on - strandat 645.730 kb on + strandat 645.730 kb on + strandat 645.731 kb on - strandat 645.949 kb on + strand, within GFF2926at 645.950 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 646.060 kb on + strand, within GFF2926at 646.061 kb on - strand, within GFF2926at 646.216 kb on - strand, within GFF2926at 646.216 kb on - strand, within GFF2926at 646.319 kb on - strand, within GFF2926at 646.321 kb on + strand, within GFF2926at 646.321 kb on + strand, within GFF2926at 646.321 kb on + strand, within GFF2926at 646.322 kb on - strand, within GFF2926at 646.516 kb on + strand, within GFF2926at 646.517 kb on - strand, within GFF2926at 646.517 kb on - strand, within GFF2926at 646.517 kb on - strand, within GFF2926at 646.517 kb on - strand, within GFF2926at 646.517 kb on - strand, within GFF2926at 646.705 kb on - strand, within GFF2926at 646.705 kb on - strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.951 kb on + strand, within GFF2926at 646.952 kb on - strand, within GFF2926at 646.952 kb on - strand, within GFF2926at 646.952 kb on - strand, within GFF2926at 646.952 kb on - strand, within GFF2926at 646.952 kb on - strand, within GFF2926at 647.099 kb on - strand, within GFF2926at 647.197 kb on + strand, within GFF2926at 647.198 kb on - strand, within GFF2926at 647.322 kb on + strand, within GFF2926at 647.322 kb on + strand, within GFF2926at 647.322 kb on + strand, within GFF2926at 647.323 kb on - strand, within GFF2926at 647.461 kb on + strand, within GFF2926at 647.462 kb on - strand, within GFF2926at 647.608 kb on + strand, within GFF2926at 647.608 kb on + strand, within GFF2926at 647.608 kb on + strand, within GFF2926at 647.609 kb on - strand, within GFF2926at 647.609 kb on - strand, within GFF2926at 647.609 kb on - strand, within GFF2926at 647.779 kb on + strand, within GFF2926at 647.780 kb on - strand, within GFF2926at 647.780 kb on - strand, within GFF2926at 647.780 kb on - strand, within GFF2926at 648.388 kb on + strandat 648.388 kb on + strandat 648.586 kb on + strandat 649.082 kb on + strandat 649.082 kb on + strandat 649.083 kb on - strandat 649.083 kb on - strandat 649.083 kb on - strandat 649.375 kb on + strand, within GFF2928at 649.375 kb on + strand, within GFF2928at 649.376 kb on - strand, within GFF2928at 649.376 kb on - strand, within GFF2928at 649.376 kb on - strand, within GFF2928

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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644,744 + GFF2924 0.58 +0.9
644,744 + GFF2924 0.58 +1.2
644,744 + GFF2924 0.58 +0.1
644,745 - GFF2924 0.58 +0.3
644,745 - GFF2924 0.58 +0.0
644,745 - GFF2924 0.58 +0.2
644,745 - GFF2924 0.58 -1.1
644,871 + GFF2924 0.68 +1.1
644,872 - GFF2924 0.68 -1.3
644,925 + GFF2924 0.72 -0.3
644,925 + GFF2924 0.72 +0.2
644,925 + GFF2924 0.72 +1.0
644,925 + GFF2924 0.72 -0.4
644,926 - GFF2924 0.72 +0.1
644,926 - GFF2924 0.72 -0.6
644,934 + GFF2924 0.73 +0.7
644,935 - GFF2924 0.73 +0.0
645,099 + GFF2924 0.86 +0.9
645,099 + GFF2924 0.86 -0.7
645,099 + GFF2924 0.86 -0.7
645,099 + GFF2924 0.86 -0.4
645,100 - GFF2924 0.86 +1.1
645,100 - GFF2924 0.86 +0.3
645,306 - +0.5
645,407 + GFF2925 0.43 +2.1
645,407 + GFF2925 0.43 +0.1
645,408 - GFF2925 0.43 -0.8
645,408 - GFF2925 0.43 +0.0
645,527 + GFF2925 0.84 +0.9
645,527 + GFF2925 0.84 +1.3
645,528 - GFF2925 0.85 -0.4
645,661 + -1.0
645,662 - -0.0
645,662 - -1.2
645,730 + -1.0
645,730 + +0.1
645,731 - -0.0
645,949 + GFF2926 0.13 +0.6
645,950 - GFF2926 0.13 +0.8
645,953 - GFF2926 0.13 -0.5
645,953 - GFF2926 0.13 +1.5
645,953 - GFF2926 0.13 -1.2
645,994 + GFF2926 0.14 -1.0
645,994 + GFF2926 0.14 -0.1
645,994 + GFF2926 0.14 +0.5
646,060 + GFF2926 0.16 +1.4
646,061 - GFF2926 0.16 +0.5
646,216 - GFF2926 0.21 +0.7
646,216 - GFF2926 0.21 +0.2
646,319 - GFF2926 0.25 -0.3
646,321 + GFF2926 0.25 +0.5
646,321 + GFF2926 0.25 +0.4
646,321 + GFF2926 0.25 +0.0
646,322 - GFF2926 0.25 -0.3
646,516 + GFF2926 0.31 -0.2
646,517 - GFF2926 0.31 +0.4
646,517 - GFF2926 0.31 -0.8
646,517 - GFF2926 0.31 +1.0
646,517 - GFF2926 0.31 +0.6
646,517 - GFF2926 0.31 +1.0
646,705 - GFF2926 0.38 -1.2
646,705 - GFF2926 0.38 +0.3
646,951 + GFF2926 0.46 -0.0
646,951 + GFF2926 0.46 -1.7
646,951 + GFF2926 0.46 -0.7
646,951 + GFF2926 0.46 -0.3
646,951 + GFF2926 0.46 -2.6
646,951 + GFF2926 0.46 -1.0
646,952 - GFF2926 0.46 -0.4
646,952 - GFF2926 0.46 -1.5
646,952 - GFF2926 0.46 +0.5
646,952 - GFF2926 0.46 -0.5
646,952 - GFF2926 0.46 +0.3
647,099 - GFF2926 0.51 +1.6
647,197 + GFF2926 0.54 -0.1
647,198 - GFF2926 0.54 -0.5
647,322 + GFF2926 0.58 +0.1
647,322 + GFF2926 0.58 -0.7
647,322 + GFF2926 0.58 +0.2
647,323 - GFF2926 0.58 +0.0
647,461 + GFF2926 0.63 +1.7
647,462 - GFF2926 0.63 +0.2
647,608 + GFF2926 0.68 +0.2
647,608 + GFF2926 0.68 -0.3
647,608 + GFF2926 0.68 +0.9
647,609 - GFF2926 0.68 -2.1
647,609 - GFF2926 0.68 +1.5
647,609 - GFF2926 0.68 -0.0
647,779 + GFF2926 0.73 +1.1
647,780 - GFF2926 0.73 +0.6
647,780 - GFF2926 0.73 -0.2
647,780 - GFF2926 0.73 +0.3
648,388 + -0.4
648,388 + +0.7
648,586 + +0.9
649,082 + -0.3
649,082 + +0.1
649,083 - -0.1
649,083 - -0.4
649,083 - -0.3
649,375 + GFF2928 0.36 -0.6
649,375 + GFF2928 0.36 -0.1
649,376 - GFF2928 0.36 +0.1
649,376 - GFF2928 0.36 +0.7
649,376 - GFF2928 0.36 +1.1

Or see this region's nucleotide sequence