Strain Fitness in Xanthobacter sp. DMC5 around GFF2869

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2868 and GFF2869 are separated by 84 nucleotidesGFF2869 and GFF2870 are separated by 31 nucleotides GFF2868 - 2-keto-4-carboxy-3-hexenedioate hydratase, at 585,290 to 586,237 GFF2868 GFF2869 - hypothetical protein, at 586,322 to 587,158 GFF2869 GFF2870 - putative protein YisK, at 587,190 to 588,071 GFF2870 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1at 585.726 kb on + strand, within GFF2868at 585.726 kb on + strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.727 kb on - strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.738 kb on + strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.739 kb on - strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.780 kb on + strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.781 kb on - strand, within GFF2868at 585.925 kb on - strand, within GFF2868at 585.925 kb on - strand, within GFF2868at 586.073 kb on + strand, within GFF2868at 586.074 kb on - strand, within GFF2868at 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.180 kb on - strandat 586.197 kb on + strandat 586.198 kb on - strandat 586.555 kb on - strand, within GFF2869at 586.555 kb on - strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.626 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.917 kb on + strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.918 kb on - strand, within GFF2869at 586.986 kb on + strand, within GFF2869at 586.986 kb on + strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 586.987 kb on - strand, within GFF2869at 587.199 kb on - strandat 587.229 kb on - strandat 587.282 kb on - strand, within GFF2870at 587.282 kb on - strand, within GFF2870at 587.346 kb on + strand, within GFF2870at 587.346 kb on + strand, within GFF2870at 587.346 kb on + strand, within GFF2870at 587.346 kb on + strand, within GFF2870at 587.347 kb on - strand, within GFF2870at 587.575 kb on + strand, within GFF2870at 587.576 kb on - strand, within GFF2870at 587.587 kb on + strand, within GFF2870at 587.587 kb on + strand, within GFF2870at 587.588 kb on - strand, within GFF2870at 587.613 kb on - strand, within GFF2870at 587.656 kb on + strand, within GFF2870at 587.657 kb on - strand, within GFF2870at 587.783 kb on - strand, within GFF2870at 587.783 kb on - strand, within GFF2870at 587.783 kb on - strand, within GFF2870at 587.807 kb on - strand, within GFF2870at 587.807 kb on - strand, within GFF2870at 587.807 kb on - strand, within GFF2870

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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585,726 + GFF2868 0.46 -0.1
585,726 + GFF2868 0.46 -1.0
585,727 - GFF2868 0.46 -1.4
585,727 - GFF2868 0.46 -1.5
585,727 - GFF2868 0.46 -0.1
585,738 + GFF2868 0.47 +0.7
585,738 + GFF2868 0.47 -0.2
585,738 + GFF2868 0.47 +0.2
585,739 - GFF2868 0.47 +0.2
585,739 - GFF2868 0.47 +0.1
585,739 - GFF2868 0.47 +0.5
585,780 + GFF2868 0.52 -1.2
585,780 + GFF2868 0.52 -0.2
585,780 + GFF2868 0.52 -0.7
585,780 + GFF2868 0.52 -0.6
585,781 - GFF2868 0.52 -0.9
585,781 - GFF2868 0.52 -0.2
585,781 - GFF2868 0.52 +0.2
585,781 - GFF2868 0.52 -0.3
585,781 - GFF2868 0.52 -0.4
585,781 - GFF2868 0.52 -0.6
585,781 - GFF2868 0.52 -0.4
585,925 - GFF2868 0.67 -1.4
585,925 - GFF2868 0.67 -1.7
586,073 + GFF2868 0.83 -0.1
586,074 - GFF2868 0.83 +0.0
586,179 + -0.7
586,179 + +0.4
586,179 + -0.2
586,179 + -0.5
586,179 + -2.7
586,179 + -0.0
586,179 + -0.3
586,179 + -1.0
586,180 - +0.1
586,180 - -0.0
586,180 - -0.8
586,180 - +0.1
586,180 - +0.9
586,197 + -0.3
586,198 - -2.6
586,555 - GFF2869 0.28 +0.0
586,555 - GFF2869 0.28 +0.3
586,626 + GFF2869 0.36 +0.5
586,626 + GFF2869 0.36 +0.3
586,626 + GFF2869 0.36 +0.9
586,626 + GFF2869 0.36 +0.7
586,917 + GFF2869 0.71 +0.5
586,917 + GFF2869 0.71 +0.8
586,917 + GFF2869 0.71 -0.5
586,918 - GFF2869 0.71 +0.2
586,918 - GFF2869 0.71 -1.0
586,918 - GFF2869 0.71 -0.4
586,918 - GFF2869 0.71 -0.3
586,986 + GFF2869 0.79 -0.2
586,986 + GFF2869 0.79 +0.2
586,987 - GFF2869 0.79 -0.1
586,987 - GFF2869 0.79 -0.5
586,987 - GFF2869 0.79 +0.3
587,199 - +0.1
587,229 - -1.1
587,282 - GFF2870 0.10 +0.5
587,282 - GFF2870 0.10 +0.8
587,346 + GFF2870 0.18 +0.3
587,346 + GFF2870 0.18 -0.7
587,346 + GFF2870 0.18 -0.7
587,346 + GFF2870 0.18 -0.1
587,347 - GFF2870 0.18 -0.1
587,575 + GFF2870 0.44 +0.9
587,576 - GFF2870 0.44 -0.5
587,587 + GFF2870 0.45 -0.1
587,587 + GFF2870 0.45 +0.4
587,588 - GFF2870 0.45 +0.7
587,613 - GFF2870 0.48 -1.3
587,656 + GFF2870 0.53 +0.1
587,657 - GFF2870 0.53 -0.0
587,783 - GFF2870 0.67 -0.3
587,783 - GFF2870 0.67 -1.1
587,783 - GFF2870 0.67 -0.1
587,807 - GFF2870 0.70 -0.6
587,807 - GFF2870 0.70 +0.0
587,807 - GFF2870 0.70 +0.2

Or see this region's nucleotide sequence