Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2853 and GFF2854 are separated by 31 nucleotides GFF2854 and GFF2855 are separated by 170 nucleotides
GFF2853 - Glycerate dehydrogenase, at 565,533 to 566,492
GFF2853
GFF2854 - Transketolase 1, at 566,524 to 568,563
GFF2854
GFF2855 - hypothetical protein, at 568,734 to 570,353
GFF2855
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -1
0
1
2 at 565.847 kb on + strand, within GFF2853 at 565.849 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 566.204 kb on - strand, within GFF2853 at 566.281 kb on - strand, within GFF2853 at 566.404 kb on + strand at 566.405 kb on - strand at 566.583 kb on - strand at 566.894 kb on + strand, within GFF2854 at 567.197 kb on + strand, within GFF2854 at 567.197 kb on + strand, within GFF2854 at 567.215 kb on + strand, within GFF2854 at 567.215 kb on + strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.306 kb on - strand, within GFF2854 at 567.387 kb on + strand, within GFF2854 at 567.410 kb on + strand, within GFF2854 at 567.456 kb on - strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 568.259 kb on + strand, within GFF2854 at 568.260 kb on - strand, within GFF2854 at 568.267 kb on + strand, within GFF2854 at 568.283 kb on + strand, within GFF2854 at 568.376 kb on + strand at 568.377 kb on - strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.818 kb on + strand at 568.818 kb on + strand at 569.092 kb on - strand, within GFF2855 at 569.338 kb on + strand, within GFF2855 at 569.339 kb on - strand, within GFF2855 at 569.377 kb on + strand, within GFF2855 at 569.377 kb on + strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.435 kb on + strand, within GFF2855 at 569.484 kb on + strand, within GFF2855
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 565,847 + GFF2853 0.33 +0.0 565,849 + GFF2853 0.33 -0.1 565,966 + GFF2853 0.45 +0.6 565,966 + GFF2853 0.45 +0.8 565,966 + GFF2853 0.45 -0.8 566,204 - GFF2853 0.70 -0.2 566,281 - GFF2853 0.78 +0.9 566,404 + -0.1 566,405 - +0.2 566,583 - +1.3 566,894 + GFF2854 0.18 +0.7 567,197 + GFF2854 0.33 +0.7 567,197 + GFF2854 0.33 +0.2 567,215 + GFF2854 0.34 -0.6 567,215 + GFF2854 0.34 -0.0 567,216 - GFF2854 0.34 -0.4 567,216 - GFF2854 0.34 -0.3 567,216 - GFF2854 0.34 +1.9 567,306 - GFF2854 0.38 +0.5 567,387 + GFF2854 0.42 +0.2 567,410 + GFF2854 0.43 +0.3 567,456 - GFF2854 0.46 +0.1 567,485 + GFF2854 0.47 -0.7 567,485 + GFF2854 0.47 +0.5 567,485 + GFF2854 0.47 +0.3 567,485 + GFF2854 0.47 -0.1 568,259 + GFF2854 0.85 -1.3 568,260 - GFF2854 0.85 -1.3 568,267 + GFF2854 0.85 +0.1 568,283 + GFF2854 0.86 -0.5 568,376 + -0.8 568,377 - -0.1 568,735 + +0.0 568,735 + +0.3 568,735 + +0.6 568,735 + -0.1 568,818 + -0.1 568,818 + -0.5 569,092 - GFF2855 0.22 +0.4 569,338 + GFF2855 0.37 +0.8 569,339 - GFF2855 0.37 -0.1 569,377 + GFF2855 0.40 +0.3 569,377 + GFF2855 0.40 +0.1 569,378 - GFF2855 0.40 +0.5 569,378 - GFF2855 0.40 +0.3 569,378 - GFF2855 0.40 +0.7 569,435 + GFF2855 0.43 -1.0 569,484 + GFF2855 0.46 -0.0
Or see this region's nucleotide sequence