Strain Fitness in Xanthobacter sp. DMC5 around GFF2761

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2759 and GFF2760 are separated by 1 nucleotidesGFF2760 and GFF2761 overlap by 13 nucleotidesGFF2761 and GFF2762 are separated by 6 nucleotides GFF2759 - Putative aliphatic sulfonates transport permease protein SsuC, at 460,525 to 461,313 GFF2759 GFF2760 - Nitrate import ATP-binding protein NrtD, at 461,315 to 462,148 GFF2760 GFF2761 - Putative aliphatic sulfonates transport permease protein SsuC, at 462,136 to 462,900 GFF2761 GFF2762 - hypothetical protein, at 462,907 to 463,872 GFF2762 Position (kb) 462 463Strain fitness (log2 ratio) -2 -1 0 1at 461.385 kb on + strandat 461.385 kb on + strandat 461.385 kb on + strandat 461.386 kb on - strandat 461.472 kb on + strand, within GFF2760at 461.472 kb on + strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 462.030 kb on + strand, within GFF2760at 462.167 kb on + strandat 462.167 kb on + strandat 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.383 kb on + strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.395 kb on + strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.419 kb on + strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.597 kb on - strand, within GFF2761at 462.624 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.720 kb on - strand, within GFF2761at 462.947 kb on + strandat 462.948 kb on - strandat 462.948 kb on - strandat 462.948 kb on - strandat 463.059 kb on + strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.148 kb on + strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.344 kb on - strand, within GFF2762at 463.488 kb on - strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.561 kb on - strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.710 kb on - strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.849 kb on + strandat 463.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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461,385 + -1.1
461,385 + -1.0
461,385 + -0.1
461,386 - +0.7
461,472 + GFF2760 0.19 +0.6
461,472 + GFF2760 0.19 -1.1
461,473 - GFF2760 0.19 +0.1
461,473 - GFF2760 0.19 +1.0
461,473 - GFF2760 0.19 +0.0
461,473 - GFF2760 0.19 -0.4
461,473 - GFF2760 0.19 +0.6
462,030 + GFF2760 0.86 -0.4
462,167 + -0.1
462,167 + -0.9
462,227 + GFF2761 0.12 -0.0
462,227 + GFF2761 0.12 +0.4
462,227 + GFF2761 0.12 +0.3
462,228 - GFF2761 0.12 -0.0
462,228 - GFF2761 0.12 +0.6
462,228 - GFF2761 0.12 -0.0
462,383 + GFF2761 0.32 +0.3
462,384 - GFF2761 0.32 +1.3
462,384 - GFF2761 0.32 +0.0
462,384 - GFF2761 0.32 -0.2
462,384 - GFF2761 0.32 +1.1
462,384 - GFF2761 0.32 -1.5
462,395 + GFF2761 0.34 +0.4
462,396 - GFF2761 0.34 +0.2
462,396 - GFF2761 0.34 -1.7
462,396 - GFF2761 0.34 -0.7
462,419 + GFF2761 0.37 +0.4
462,420 - GFF2761 0.37 +0.0
462,420 - GFF2761 0.37 -0.3
462,568 + GFF2761 0.56 +1.6
462,568 + GFF2761 0.56 +0.2
462,596 + GFF2761 0.60 -1.0
462,596 + GFF2761 0.60 +0.1
462,597 - GFF2761 0.60 -0.9
462,624 + GFF2761 0.64 +0.0
462,626 + GFF2761 0.64 -0.4
462,626 + GFF2761 0.64 +0.3
462,626 + GFF2761 0.64 -0.3
462,627 - GFF2761 0.64 -1.3
462,627 - GFF2761 0.64 -0.9
462,720 - GFF2761 0.76 +0.0
462,947 + +0.9
462,948 - -0.4
462,948 - +0.8
462,948 - +0.3
463,059 + GFF2762 0.16 -0.3
463,060 - GFF2762 0.16 -0.7
463,060 - GFF2762 0.16 +0.3
463,148 + GFF2762 0.25 -0.6
463,149 - GFF2762 0.25 +0.3
463,149 - GFF2762 0.25 -0.4
463,149 - GFF2762 0.25 +0.0
463,164 - GFF2762 0.27 +1.1
463,164 - GFF2762 0.27 +1.1
463,164 - GFF2762 0.27 +0.1
463,307 + GFF2762 0.41 -0.0
463,307 + GFF2762 0.41 +1.0
463,307 + GFF2762 0.41 +0.4
463,308 - GFF2762 0.42 -0.1
463,308 - GFF2762 0.42 +0.7
463,308 - GFF2762 0.42 +0.2
463,344 - GFF2762 0.45 -0.4
463,488 - GFF2762 0.60 -0.2
463,560 + GFF2762 0.68 +0.9
463,560 + GFF2762 0.68 -0.0
463,561 - GFF2762 0.68 +1.7
463,676 + GFF2762 0.80 -2.0
463,676 + GFF2762 0.80 +0.4
463,710 - GFF2762 0.83 +0.9
463,757 + GFF2762 0.88 +0.1
463,757 + GFF2762 0.88 -0.0
463,757 + GFF2762 0.88 +0.9
463,757 + GFF2762 0.88 +1.2
463,757 + GFF2762 0.88 +0.7
463,758 - GFF2762 0.88 +0.1
463,758 - GFF2762 0.88 -0.7
463,758 - GFF2762 0.88 +0.2
463,758 - GFF2762 0.88 +0.0
463,758 - GFF2762 0.88 +0.1
463,758 - GFF2762 0.88 -0.1
463,849 + -0.2
463,850 - +0.3

Or see this region's nucleotide sequence