Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2726 and GFF2727 are separated by 10 nucleotides GFF2727 and GFF2728 are separated by 27 nucleotides GFF2728 and GFF2729 are separated by 5 nucleotides GFF2729 and GFF2730 are separated by 26 nucleotides
GFF2726 - hypothetical protein, at 419,977 to 420,837
GFF2726
GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636
GFF2727
GFF2728 - hypothetical protein, at 421,664 to 422,242
GFF2728
GFF2729 - hypothetical protein, at 422,248 to 422,832
GFF2729
GFF2730 - Enamidase, at 422,859 to 424,064
GFF2730
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 420.672 kb on + strand, within GFF2726 at 420.706 kb on + strand, within GFF2726 at 421.037 kb on + strand, within GFF2727 at 421.037 kb on + strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.038 kb on - strand, within GFF2727 at 421.039 kb on + strand, within GFF2727 at 421.039 kb on + strand, within GFF2727 at 421.039 kb on + strand, within GFF2727 at 421.040 kb on - strand, within GFF2727 at 421.040 kb on - strand, within GFF2727 at 421.051 kb on + strand, within GFF2727 at 421.235 kb on + strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.296 kb on - strand, within GFF2727 at 421.538 kb on + strand, within GFF2727 at 421.539 kb on - strand, within GFF2727 at 421.539 kb on - strand, within GFF2727 at 421.645 kb on + strand at 421.645 kb on + strand at 421.645 kb on + strand at 421.791 kb on - strand, within GFF2728 at 421.970 kb on + strand, within GFF2728 at 421.971 kb on - strand, within GFF2728 at 422.068 kb on + strand, within GFF2728 at 422.068 kb on + strand, within GFF2728 at 422.068 kb on + strand, within GFF2728 at 422.068 kb on + strand, within GFF2728 at 422.069 kb on - strand, within GFF2728 at 422.069 kb on - strand, within GFF2728 at 422.069 kb on - strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.081 kb on + strand, within GFF2728 at 422.082 kb on - strand, within GFF2728 at 422.082 kb on - strand, within GFF2728 at 422.082 kb on - strand, within GFF2728 at 422.291 kb on + strand at 422.377 kb on + strand, within GFF2729 at 422.377 kb on + strand, within GFF2729 at 422.456 kb on + strand, within GFF2729 at 422.456 kb on + strand, within GFF2729 at 422.456 kb on + strand, within GFF2729 at 422.457 kb on - strand, within GFF2729 at 422.485 kb on + strand, within GFF2729 at 422.485 kb on + strand, within GFF2729 at 422.485 kb on + strand, within GFF2729 at 422.486 kb on - strand, within GFF2729 at 422.486 kb on - strand, within GFF2729 at 422.504 kb on + strand, within GFF2729 at 422.504 kb on + strand, within GFF2729 at 422.550 kb on + strand, within GFF2729 at 422.550 kb on + strand, within GFF2729 at 422.550 kb on + strand, within GFF2729 at 422.550 kb on + strand, within GFF2729 at 422.551 kb on - strand, within GFF2729 at 422.910 kb on - strand at 422.960 kb on + strand at 422.960 kb on + strand at 422.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 420,672 + GFF2726 0.81 -0.1 420,706 + GFF2726 0.85 -0.4 421,037 + GFF2727 0.24 +0.1 421,037 + GFF2727 0.24 +1.5 421,038 - GFF2727 0.24 -0.3 421,038 - GFF2727 0.24 +0.1 421,038 - GFF2727 0.24 -0.5 421,038 - GFF2727 0.24 -0.9 421,038 - GFF2727 0.24 -0.9 421,038 - GFF2727 0.24 +1.1 421,038 - GFF2727 0.24 -0.9 421,039 + GFF2727 0.24 +1.0 421,039 + GFF2727 0.24 +0.7 421,039 + GFF2727 0.24 -0.4 421,040 - GFF2727 0.24 +0.8 421,040 - GFF2727 0.24 +0.9 421,051 + GFF2727 0.26 +0.2 421,235 + GFF2727 0.49 -0.5 421,296 - GFF2727 0.57 +0.6 421,296 - GFF2727 0.57 -0.1 421,296 - GFF2727 0.57 -0.3 421,296 - GFF2727 0.57 +0.4 421,296 - GFF2727 0.57 -0.3 421,296 - GFF2727 0.57 -0.8 421,296 - GFF2727 0.57 -1.4 421,538 + GFF2727 0.87 +0.7 421,539 - GFF2727 0.88 -0.1 421,539 - GFF2727 0.88 +0.2 421,645 + +0.7 421,645 + +0.2 421,645 + -0.7 421,791 - GFF2728 0.22 +0.7 421,970 + GFF2728 0.53 -0.3 421,971 - GFF2728 0.53 -0.5 422,068 + GFF2728 0.70 +1.1 422,068 + GFF2728 0.70 +1.4 422,068 + GFF2728 0.70 -0.1 422,068 + GFF2728 0.70 +0.3 422,069 - GFF2728 0.70 -0.0 422,069 - GFF2728 0.70 +0.1 422,069 - GFF2728 0.70 +0.0 422,081 + GFF2728 0.72 +1.1 422,081 + GFF2728 0.72 +1.0 422,081 + GFF2728 0.72 -0.4 422,081 + GFF2728 0.72 +0.0 422,081 + GFF2728 0.72 -0.2 422,081 + GFF2728 0.72 +0.1 422,081 + GFF2728 0.72 +0.8 422,082 - GFF2728 0.72 -0.5 422,082 - GFF2728 0.72 +0.3 422,082 - GFF2728 0.72 -0.1 422,291 + -0.2 422,377 + GFF2729 0.22 +0.5 422,377 + GFF2729 0.22 -0.5 422,456 + GFF2729 0.36 +0.2 422,456 + GFF2729 0.36 -0.3 422,456 + GFF2729 0.36 +0.9 422,457 - GFF2729 0.36 -0.3 422,485 + GFF2729 0.41 -0.0 422,485 + GFF2729 0.41 +0.9 422,485 + GFF2729 0.41 +0.0 422,486 - GFF2729 0.41 -0.8 422,486 - GFF2729 0.41 +0.0 422,504 + GFF2729 0.44 +0.3 422,504 + GFF2729 0.44 -0.1 422,550 + GFF2729 0.52 +1.5 422,550 + GFF2729 0.52 +0.2 422,550 + GFF2729 0.52 -0.3 422,550 + GFF2729 0.52 -1.8 422,551 - GFF2729 0.52 -0.8 422,910 - -1.1 422,960 + -0.4 422,960 + +0.3 422,961 - -1.3
Or see this region's nucleotide sequence