Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2715 and GFF2716 are separated by 398 nucleotides GFF2716 and GFF2717 are separated by 329 nucleotides
GFF2715 - hypothetical protein, at 406,565 to 409,915
GFF2715
GFF2716 - hypothetical protein, at 410,314 to 410,412
GFF2716
GFF2717 - NADPH dehydrogenase, at 410,742 to 411,854
GFF2717
Position (kb) 410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 409.374 kb on + strand, within GFF2715 at 409.374 kb on + strand, within GFF2715 at 409.456 kb on + strand, within GFF2715 at 409.457 kb on - strand, within GFF2715 at 409.823 kb on + strand at 409.824 kb on - strand at 409.866 kb on + strand at 409.866 kb on + strand at 409.866 kb on + strand at 409.866 kb on + strand at 409.867 kb on - strand at 409.945 kb on + strand at 409.946 kb on - strand at 410.086 kb on - strand at 410.086 kb on - strand at 410.098 kb on + strand at 410.098 kb on + strand at 410.098 kb on + strand at 410.101 kb on + strand at 410.102 kb on - strand at 410.102 kb on - strand at 410.149 kb on + strand at 410.150 kb on - strand at 410.175 kb on + strand at 410.175 kb on + strand at 410.176 kb on - strand at 410.265 kb on + strand at 410.386 kb on + strand, within GFF2716 at 410.387 kb on - strand, within GFF2716 at 410.587 kb on + strand at 410.587 kb on + strand at 410.587 kb on + strand at 410.587 kb on + strand at 410.587 kb on + strand at 410.588 kb on - strand at 410.588 kb on - strand at 410.588 kb on - strand at 410.588 kb on - strand at 410.588 kb on - strand at 410.588 kb on - strand at 410.598 kb on + strand at 410.599 kb on - strand at 410.699 kb on + strand at 410.743 kb on + strand at 410.743 kb on + strand at 410.807 kb on - strand at 410.823 kb on + strand at 410.872 kb on + strand, within GFF2717 at 410.872 kb on + strand, within GFF2717 at 410.873 kb on - strand, within GFF2717 at 410.873 kb on - strand, within GFF2717 at 410.873 kb on - strand, within GFF2717 at 410.873 kb on - strand, within GFF2717 at 410.874 kb on + strand, within GFF2717 at 410.874 kb on + strand, within GFF2717 at 410.874 kb on + strand, within GFF2717 at 410.874 kb on + strand, within GFF2717 at 410.874 kb on + strand, within GFF2717 at 410.875 kb on - strand, within GFF2717 at 410.875 kb on - strand, within GFF2717 at 410.875 kb on - strand, within GFF2717 at 410.924 kb on + strand, within GFF2717 at 410.924 kb on + strand, within GFF2717 at 410.924 kb on + strand, within GFF2717 at 410.925 kb on - strand, within GFF2717 at 410.925 kb on - strand, within GFF2717 at 411.017 kb on - strand, within GFF2717 at 411.259 kb on + strand, within GFF2717 at 411.260 kb on - strand, within GFF2717 at 411.310 kb on + strand, within GFF2717 at 411.311 kb on - strand, within GFF2717 at 411.311 kb on - strand, within GFF2717
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 409,374 + GFF2715 0.84 +0.3 409,374 + GFF2715 0.84 -0.7 409,456 + GFF2715 0.86 +0.4 409,457 - GFF2715 0.86 +0.5 409,823 + +0.1 409,824 - +0.6 409,866 + -0.1 409,866 + -1.8 409,866 + -0.1 409,866 + -0.7 409,867 - -0.0 409,945 + -0.6 409,946 - +0.3 410,086 - +1.1 410,086 - -0.8 410,098 + -0.6 410,098 + +0.3 410,098 + +0.2 410,101 + +0.8 410,102 - +0.4 410,102 - -1.4 410,149 + -1.1 410,150 - -0.2 410,175 + -0.2 410,175 + +0.2 410,176 - -0.1 410,265 + +1.6 410,386 + GFF2716 0.73 -0.0 410,387 - GFF2716 0.74 -0.7 410,587 + -0.3 410,587 + +0.6 410,587 + +0.4 410,587 + -1.7 410,587 + +1.7 410,588 - +0.3 410,588 - +0.7 410,588 - -0.4 410,588 - -0.1 410,588 - -0.2 410,588 - +0.4 410,598 + +0.5 410,599 - -0.6 410,699 + -0.2 410,743 + -0.4 410,743 + -0.0 410,807 - -1.2 410,823 + +0.6 410,872 + GFF2717 0.12 +0.7 410,872 + GFF2717 0.12 -0.6 410,873 - GFF2717 0.12 +0.2 410,873 - GFF2717 0.12 -0.2 410,873 - GFF2717 0.12 +0.9 410,873 - GFF2717 0.12 -0.5 410,874 + GFF2717 0.12 +0.2 410,874 + GFF2717 0.12 -1.0 410,874 + GFF2717 0.12 +0.2 410,874 + GFF2717 0.12 -0.0 410,874 + GFF2717 0.12 -0.7 410,875 - GFF2717 0.12 -0.1 410,875 - GFF2717 0.12 +0.5 410,875 - GFF2717 0.12 -1.8 410,924 + GFF2717 0.16 -1.5 410,924 + GFF2717 0.16 +0.4 410,924 + GFF2717 0.16 -0.4 410,925 - GFF2717 0.16 +0.9 410,925 - GFF2717 0.16 -0.2 411,017 - GFF2717 0.25 +0.2 411,259 + GFF2717 0.46 -1.9 411,260 - GFF2717 0.47 -0.4 411,310 + GFF2717 0.51 -0.9 411,311 - GFF2717 0.51 -0.9 411,311 - GFF2717 0.51 +0.7
Or see this region's nucleotide sequence