Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2706 and GFF2707 are separated by 9 nucleotides GFF2707 and GFF2708 overlap by 4 nucleotides GFF2708 and GFF2709 overlap by 4 nucleotides
GFF2706 - Ferrichrome outer membrane transporter/phage receptor, at 394,500 to 396,926
GFF2706
GFF2707 - Iron(3+)-hydroxamate-binding protein FhuD, at 396,936 to 397,850
GFF2707
GFF2708 - Iron(3+)-hydroxamate import system permease protein FhuB, at 397,847 to 399,874
GFF2708
GFF2709 - ABC transporter ATP-binding/permease protein YojI, at 399,871 to 401,556
GFF2709
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 396.867 kb on + strand at 396.868 kb on - strand at 396.876 kb on + strand at 396.879 kb on + strand at 396.879 kb on + strand at 396.880 kb on - strand at 396.880 kb on - strand at 396.915 kb on + strand at 396.915 kb on + strand at 396.916 kb on - strand at 396.916 kb on - strand at 396.916 kb on - strand at 397.098 kb on + strand, within GFF2707 at 397.098 kb on + strand, within GFF2707 at 397.098 kb on + strand, within GFF2707 at 397.098 kb on + strand, within GFF2707 at 397.099 kb on - strand, within GFF2707 at 397.099 kb on - strand, within GFF2707 at 397.099 kb on - strand, within GFF2707 at 397.103 kb on + strand, within GFF2707 at 397.140 kb on - strand, within GFF2707 at 397.143 kb on + strand, within GFF2707 at 397.144 kb on - strand, within GFF2707 at 397.344 kb on + strand, within GFF2707 at 397.345 kb on - strand, within GFF2707 at 397.345 kb on - strand, within GFF2707 at 397.345 kb on - strand, within GFF2707 at 397.422 kb on - strand, within GFF2707 at 397.467 kb on + strand, within GFF2707 at 397.485 kb on + strand, within GFF2707 at 397.485 kb on + strand, within GFF2707 at 397.486 kb on - strand, within GFF2707 at 397.486 kb on - strand, within GFF2707 at 398.044 kb on - strand at 398.045 kb on + strand at 398.157 kb on + strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.158 kb on - strand, within GFF2708 at 398.204 kb on + strand, within GFF2708 at 398.205 kb on - strand, within GFF2708 at 398.212 kb on + strand, within GFF2708 at 398.213 kb on - strand, within GFF2708 at 398.213 kb on - strand, within GFF2708 at 398.322 kb on + strand, within GFF2708 at 398.322 kb on + strand, within GFF2708 at 398.322 kb on + strand, within GFF2708 at 398.323 kb on - strand, within GFF2708 at 398.323 kb on - strand, within GFF2708 at 398.625 kb on + strand, within GFF2708 at 398.626 kb on - strand, within GFF2708 at 398.626 kb on - strand, within GFF2708 at 398.820 kb on + strand, within GFF2708 at 398.821 kb on - strand, within GFF2708 at 399.013 kb on + strand, within GFF2708 at 399.013 kb on + strand, within GFF2708 at 399.014 kb on - strand, within GFF2708 at 399.267 kb on + strand, within GFF2708 at 399.267 kb on + strand, within GFF2708 at 399.267 kb on + strand, within GFF2708 at 399.267 kb on + strand, within GFF2708 at 399.268 kb on - strand, within GFF2708 at 399.268 kb on - strand, within GFF2708 at 399.268 kb on - strand, within GFF2708 at 399.681 kb on + strand at 399.682 kb on - strand at 399.682 kb on - strand at 399.682 kb on - strand at 399.828 kb on - strand at 399.928 kb on - strand at 399.928 kb on - strand at 400.210 kb on + strand, within GFF2709 at 400.210 kb on + strand, within GFF2709 at 400.211 kb on - strand, within GFF2709 at 400.288 kb on + strand, within GFF2709 at 400.288 kb on + strand, within GFF2709 at 400.288 kb on + strand, within GFF2709 at 400.288 kb on + strand, within GFF2709 at 400.289 kb on - strand, within GFF2709 at 400.289 kb on - strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.322 kb on + strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.323 kb on - strand, within GFF2709 at 400.327 kb on + strand, within GFF2709 at 400.327 kb on + strand, within GFF2709 at 400.327 kb on + strand, within GFF2709 at 400.327 kb on + strand, within GFF2709 at 400.327 kb on + strand, within GFF2709 at 400.370 kb on + strand, within GFF2709 at 400.371 kb on - strand, within GFF2709 at 400.371 kb on - strand, within GFF2709 at 400.371 kb on - strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.429 kb on + strand, within GFF2709 at 400.430 kb on - strand, within GFF2709 at 400.430 kb on - strand, within GFF2709 at 400.472 kb on - strand, within GFF2709 at 400.472 kb on - strand, within GFF2709 at 400.482 kb on + strand, within GFF2709 at 400.532 kb on + strand, within GFF2709 at 400.533 kb on - strand, within GFF2709 at 400.600 kb on + strand, within GFF2709 at 400.600 kb on + strand, within GFF2709 at 400.600 kb on + strand, within GFF2709 at 400.601 kb on - strand, within GFF2709 at 400.601 kb on - strand, within GFF2709 at 400.638 kb on + strand, within GFF2709 at 400.639 kb on - strand, within GFF2709 at 400.682 kb on + strand, within GFF2709 at 400.683 kb on - strand, within GFF2709 at 400.683 kb on - strand, within GFF2709 at 400.683 kb on - strand, within GFF2709 at 400.723 kb on + strand, within GFF2709 at 400.724 kb on - strand, within GFF2709 at 400.724 kb on - strand, within GFF2709 at 400.724 kb on - strand, within GFF2709 at 400.797 kb on + strand, within GFF2709 at 400.797 kb on + strand, within GFF2709 at 400.797 kb on + strand, within GFF2709 at 400.797 kb on + strand, within GFF2709 at 400.797 kb on + strand, within GFF2709 at 400.798 kb on - strand, within GFF2709 at 400.798 kb on - strand, within GFF2709 at 400.798 kb on - strand, within GFF2709 at 400.866 kb on - strand, within GFF2709
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 396,867 + +1.2 396,868 - +0.4 396,876 + +0.9 396,879 + +0.1 396,879 + -0.3 396,880 - +0.7 396,880 - -0.2 396,915 + -0.2 396,915 + -1.3 396,916 - -0.2 396,916 - +0.0 396,916 - +0.1 397,098 + GFF2707 0.18 -0.6 397,098 + GFF2707 0.18 +0.3 397,098 + GFF2707 0.18 +0.2 397,098 + GFF2707 0.18 -0.2 397,099 - GFF2707 0.18 -0.1 397,099 - GFF2707 0.18 +0.1 397,099 - GFF2707 0.18 -0.1 397,103 + GFF2707 0.18 -1.1 397,140 - GFF2707 0.22 +0.2 397,143 + GFF2707 0.23 +0.3 397,144 - GFF2707 0.23 +0.8 397,344 + GFF2707 0.45 -0.1 397,345 - GFF2707 0.45 -0.1 397,345 - GFF2707 0.45 -0.4 397,345 - GFF2707 0.45 -0.2 397,422 - GFF2707 0.53 +0.3 397,467 + GFF2707 0.58 -0.2 397,485 + GFF2707 0.60 -0.1 397,485 + GFF2707 0.60 +0.1 397,486 - GFF2707 0.60 -0.6 397,486 - GFF2707 0.60 +0.9 398,044 - +0.2 398,045 + +0.4 398,157 + GFF2708 0.15 +1.5 398,158 - GFF2708 0.15 -0.4 398,158 - GFF2708 0.15 +0.9 398,158 - GFF2708 0.15 -0.3 398,158 - GFF2708 0.15 -0.4 398,158 - GFF2708 0.15 +0.6 398,158 - GFF2708 0.15 +0.9 398,158 - GFF2708 0.15 -1.4 398,204 + GFF2708 0.18 +0.3 398,205 - GFF2708 0.18 -0.5 398,212 + GFF2708 0.18 +0.2 398,213 - GFF2708 0.18 +0.6 398,213 - GFF2708 0.18 +1.2 398,322 + GFF2708 0.23 -0.5 398,322 + GFF2708 0.23 -0.2 398,322 + GFF2708 0.23 -0.9 398,323 - GFF2708 0.23 -0.7 398,323 - GFF2708 0.23 +0.8 398,625 + GFF2708 0.38 +0.5 398,626 - GFF2708 0.38 -0.5 398,626 - GFF2708 0.38 -0.1 398,820 + GFF2708 0.48 -1.3 398,821 - GFF2708 0.48 +1.7 399,013 + GFF2708 0.57 +0.3 399,013 + GFF2708 0.57 -0.1 399,014 - GFF2708 0.58 +0.1 399,267 + GFF2708 0.70 -0.4 399,267 + GFF2708 0.70 -0.4 399,267 + GFF2708 0.70 -0.6 399,267 + GFF2708 0.70 -0.4 399,268 - GFF2708 0.70 +0.3 399,268 - GFF2708 0.70 +0.3 399,268 - GFF2708 0.70 +0.6 399,681 + -0.1 399,682 - -1.0 399,682 - +1.1 399,682 - -0.0 399,828 - +0.4 399,928 - +1.0 399,928 - -0.3 400,210 + GFF2709 0.20 +0.1 400,210 + GFF2709 0.20 -1.7 400,211 - GFF2709 0.20 -0.1 400,288 + GFF2709 0.25 -0.4 400,288 + GFF2709 0.25 -0.6 400,288 + GFF2709 0.25 +0.1 400,288 + GFF2709 0.25 +0.2 400,289 - GFF2709 0.25 -0.8 400,289 - GFF2709 0.25 +0.1 400,322 + GFF2709 0.27 +1.1 400,322 + GFF2709 0.27 +0.1 400,322 + GFF2709 0.27 -0.1 400,322 + GFF2709 0.27 +0.2 400,322 + GFF2709 0.27 -0.1 400,322 + GFF2709 0.27 -0.5 400,322 + GFF2709 0.27 -0.1 400,322 + GFF2709 0.27 +0.3 400,322 + GFF2709 0.27 +1.6 400,322 + GFF2709 0.27 -0.7 400,322 + GFF2709 0.27 -0.1 400,322 + GFF2709 0.27 +0.1 400,322 + GFF2709 0.27 +0.3 400,323 - GFF2709 0.27 +0.1 400,323 - GFF2709 0.27 -0.6 400,323 - GFF2709 0.27 -0.2 400,323 - GFF2709 0.27 +0.0 400,323 - GFF2709 0.27 +0.0 400,323 - GFF2709 0.27 -0.6 400,323 - GFF2709 0.27 -0.0 400,323 - GFF2709 0.27 +0.6 400,323 - GFF2709 0.27 -0.1 400,327 + GFF2709 0.27 +0.9 400,327 + GFF2709 0.27 -0.0 400,327 + GFF2709 0.27 +0.3 400,327 + GFF2709 0.27 +0.7 400,327 + GFF2709 0.27 -0.6 400,370 + GFF2709 0.30 +0.3 400,371 - GFF2709 0.30 -1.3 400,371 - GFF2709 0.30 +0.5 400,371 - GFF2709 0.30 +1.3 400,429 + GFF2709 0.33 -0.3 400,429 + GFF2709 0.33 +0.2 400,429 + GFF2709 0.33 -0.1 400,429 + GFF2709 0.33 +0.1 400,429 + GFF2709 0.33 +1.1 400,429 + GFF2709 0.33 -1.1 400,430 - GFF2709 0.33 +1.4 400,430 - GFF2709 0.33 -0.6 400,472 - GFF2709 0.36 -0.3 400,472 - GFF2709 0.36 -1.6 400,482 + GFF2709 0.36 -1.1 400,532 + GFF2709 0.39 -2.7 400,533 - GFF2709 0.39 +1.2 400,600 + GFF2709 0.43 +0.8 400,600 + GFF2709 0.43 +1.1 400,600 + GFF2709 0.43 +0.7 400,601 - GFF2709 0.43 +0.4 400,601 - GFF2709 0.43 -0.4 400,638 + GFF2709 0.45 -0.4 400,639 - GFF2709 0.46 -0.7 400,682 + GFF2709 0.48 -0.3 400,683 - GFF2709 0.48 +0.1 400,683 - GFF2709 0.48 +0.2 400,683 - GFF2709 0.48 -0.2 400,723 + GFF2709 0.51 -0.8 400,724 - GFF2709 0.51 +0.5 400,724 - GFF2709 0.51 +0.2 400,724 - GFF2709 0.51 -0.4 400,797 + GFF2709 0.55 +0.0 400,797 + GFF2709 0.55 +0.2 400,797 + GFF2709 0.55 -0.6 400,797 + GFF2709 0.55 -0.1 400,797 + GFF2709 0.55 +0.4 400,798 - GFF2709 0.55 +0.5 400,798 - GFF2709 0.55 -1.3 400,798 - GFF2709 0.55 +1.2 400,866 - GFF2709 0.59 +0.3
Or see this region's nucleotide sequence