Strain Fitness in Xanthobacter sp. DMC5 around GFF2690

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2688 and GFF2689 are separated by 115 nucleotidesGFF2689 and GFF2690 are separated by 266 nucleotidesGFF2690 and GFF2691 are separated by 20 nucleotidesGFF2691 and GFF2692 overlap by 1 nucleotidesGFF2692 and GFF2693 overlap by 4 nucleotides GFF2688 - hypothetical protein, at 372,653 to 373,720 GFF2688 GFF2689 - hypothetical protein, at 373,836 to 374,132 GFF2689 GFF2690 - hypothetical protein, at 374,399 to 375,190 GFF2690 GFF2691 - hypothetical protein, at 375,211 to 375,669 GFF2691 GFF2692 - hypothetical protein, at 375,669 to 376,181 GFF2692 GFF2693 - hypothetical protein, at 376,178 to 376,657 GFF2693 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1at 373.415 kb on - strand, within GFF2688at 373.450 kb on - strand, within GFF2688at 373.545 kb on - strand, within GFF2688at 373.567 kb on + strand, within GFF2688at 373.611 kb on + strand, within GFF2688at 373.750 kb on + strandat 373.857 kb on - strandat 374.033 kb on + strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.307 kb on + strandat 374.307 kb on + strandat 374.307 kb on + strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.318 kb on - strandat 374.455 kb on - strandat 374.490 kb on - strand, within GFF2690at 374.490 kb on - strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.986 kb on + strand, within GFF2690at 374.987 kb on - strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.100 kb on + strand, within GFF2690at 375.188 kb on - strandat 375.275 kb on + strand, within GFF2691at 375.276 kb on - strand, within GFF2691at 375.276 kb on - strand, within GFF2691at 375.343 kb on + strand, within GFF2691at 375.343 kb on + strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.574 kb on + strand, within GFF2691at 375.575 kb on + strand, within GFF2691at 375.575 kb on + strand, within GFF2691at 375.576 kb on - strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.602 kb on - strand, within GFF2691at 375.602 kb on - strand, within GFF2691at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.777 kb on + strand, within GFF2692at 375.778 kb on - strand, within GFF2692at 375.865 kb on - strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.052 kb on - strand, within GFF2692at 376.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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373,415 - GFF2688 0.71 -0.6
373,450 - GFF2688 0.75 +0.3
373,545 - GFF2688 0.84 +0.1
373,567 + GFF2688 0.86 -0.4
373,611 + GFF2688 0.90 -0.9
373,750 + -0.3
373,857 - -2.1
374,033 + GFF2689 0.66 -0.6
374,034 - GFF2689 0.67 +1.2
374,034 - GFF2689 0.67 -0.7
374,307 + -1.0
374,307 + -0.3
374,307 + +1.2
374,308 - +0.2
374,308 - -0.2
374,308 - -0.2
374,308 - +0.9
374,308 - -0.3
374,308 - +0.3
374,308 - -1.1
374,308 - -0.4
374,318 - -0.8
374,455 - -0.0
374,490 - GFF2690 0.11 +0.8
374,490 - GFF2690 0.11 +0.3
374,491 + GFF2690 0.12 -0.7
374,491 + GFF2690 0.12 +0.2
374,491 + GFF2690 0.12 -0.6
374,491 + GFF2690 0.12 +0.5
374,491 + GFF2690 0.12 -0.0
374,491 + GFF2690 0.12 -0.6
374,492 - GFF2690 0.12 +0.4
374,492 - GFF2690 0.12 -0.1
374,492 - GFF2690 0.12 +0.4
374,492 - GFF2690 0.12 -0.2
374,753 + GFF2690 0.45 -0.1
374,753 + GFF2690 0.45 +0.5
374,753 + GFF2690 0.45 +0.2
374,753 + GFF2690 0.45 -0.8
374,753 + GFF2690 0.45 +0.0
374,753 + GFF2690 0.45 +0.1
374,754 - GFF2690 0.45 -2.2
374,754 - GFF2690 0.45 -1.7
374,760 + GFF2690 0.46 +0.3
374,760 + GFF2690 0.46 -0.7
374,858 + GFF2690 0.58 -1.5
374,858 + GFF2690 0.58 -2.1
374,859 - GFF2690 0.58 +0.2
374,859 - GFF2690 0.58 -0.6
374,859 - GFF2690 0.58 -0.2
374,986 + GFF2690 0.74 +0.3
374,987 - GFF2690 0.74 +1.6
375,084 + GFF2690 0.86 -1.9
375,084 + GFF2690 0.86 -1.4
375,084 + GFF2690 0.86 -0.4
375,084 + GFF2690 0.86 -0.4
375,084 + GFF2690 0.86 -0.7
375,084 + GFF2690 0.86 +0.5
375,085 - GFF2690 0.87 -0.9
375,085 - GFF2690 0.87 +0.8
375,085 - GFF2690 0.87 +0.5
375,100 + GFF2690 0.89 -0.2
375,188 - +0.8
375,275 + GFF2691 0.14 -0.1
375,276 - GFF2691 0.14 -1.4
375,276 - GFF2691 0.14 -0.1
375,343 + GFF2691 0.29 +0.1
375,343 + GFF2691 0.29 +0.1
375,344 - GFF2691 0.29 +0.0
375,344 - GFF2691 0.29 +0.2
375,344 - GFF2691 0.29 +0.5
375,344 - GFF2691 0.29 -0.8
375,404 - GFF2691 0.42 -0.1
375,404 - GFF2691 0.42 -0.2
375,404 - GFF2691 0.42 +0.4
375,404 - GFF2691 0.42 +0.6
375,529 + GFF2691 0.69 +0.1
375,529 + GFF2691 0.69 +0.5
375,529 + GFF2691 0.69 +0.3
375,574 + GFF2691 0.79 +0.3
375,575 + GFF2691 0.79 -0.3
375,575 + GFF2691 0.79 +0.6
375,576 - GFF2691 0.80 +0.4
375,601 + GFF2691 0.85 +0.1
375,601 + GFF2691 0.85 +0.2
375,601 + GFF2691 0.85 -0.1
375,602 - GFF2691 0.85 +1.6
375,602 - GFF2691 0.85 +0.1
375,732 + GFF2692 0.12 +0.8
375,732 + GFF2692 0.12 +0.1
375,732 + GFF2692 0.12 +0.2
375,733 - GFF2692 0.12 -0.4
375,733 - GFF2692 0.12 +0.3
375,733 - GFF2692 0.12 -0.6
375,733 - GFF2692 0.12 +0.0
375,733 - GFF2692 0.12 +0.3
375,733 - GFF2692 0.12 -0.1
375,733 - GFF2692 0.12 -0.2
375,733 - GFF2692 0.12 +1.6
375,733 - GFF2692 0.12 -0.2
375,777 + GFF2692 0.21 +0.0
375,778 - GFF2692 0.21 +0.1
375,865 - GFF2692 0.38 +0.5
375,955 + GFF2692 0.56 -0.8
375,955 + GFF2692 0.56 +0.9
375,955 + GFF2692 0.56 +0.1
375,955 + GFF2692 0.56 -0.5
375,956 - GFF2692 0.56 -0.9
375,956 - GFF2692 0.56 -0.1
375,956 - GFF2692 0.56 +0.1
375,956 - GFF2692 0.56 +0.3
375,956 - GFF2692 0.56 +0.7
375,961 - GFF2692 0.57 -0.6
375,961 - GFF2692 0.57 -1.1
376,051 + GFF2692 0.74 -1.1
376,051 + GFF2692 0.74 -0.9
376,051 + GFF2692 0.74 +0.2
376,052 - GFF2692 0.75 +0.5
376,179 + -0.3

Or see this region's nucleotide sequence