Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2674 and GFF2675 overlap by 4 nucleotides GFF2675 and GFF2676 are separated by 13 nucleotides GFF2676 and GFF2677 overlap by 4 nucleotides GFF2677 and GFF2678 are separated by 5 nucleotides
GFF2674 - Inositol-3-phosphate synthase, at 358,140 to 359,249
GFF2674
GFF2675 - Phosphoserine phosphatase 1, at 359,246 to 359,842
GFF2675
GFF2676 - tRNA U34 carboxymethyltransferase, at 359,856 to 360,614
GFF2676
GFF2677 - hypothetical protein, at 360,611 to 361,537
GFF2677
GFF2678 - UDP-glucose 4-epimerase, at 361,543 to 362,589
GFF2678
Position (kb) 359
360
361 Strain fitness (log2 ratio) -1
0
1
2 at 359.137 kb on - strand, within GFF2674 at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.258 kb on + strand at 359.258 kb on + strand at 359.258 kb on + strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.968 kb on - strand, within GFF2676 at 359.968 kb on - strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.124 kb on - strand, within GFF2676 at 360.124 kb on - strand, within GFF2676 at 360.250 kb on - strand, within GFF2676 at 360.250 kb on - strand, within GFF2676 at 360.250 kb on - strand, within GFF2676 at 360.408 kb on + strand, within GFF2676 at 360.408 kb on + strand, within GFF2676 at 360.409 kb on - strand, within GFF2676 at 360.409 kb on - strand, within GFF2676 at 360.409 kb on - strand, within GFF2676 at 360.439 kb on - strand, within GFF2676 at 360.543 kb on + strand at 360.543 kb on + strand at 360.543 kb on + strand at 360.543 kb on + strand at 360.543 kb on + strand at 360.543 kb on + strand at 360.543 kb on + strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.544 kb on - strand at 360.588 kb on + strand at 360.589 kb on - strand at 360.692 kb on + strand at 361.015 kb on + strand, within GFF2677 at 361.043 kb on + strand, within GFF2677 at 361.043 kb on + strand, within GFF2677 at 361.043 kb on + strand, within GFF2677 at 361.044 kb on - strand, within GFF2677 at 361.112 kb on + strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.113 kb on - strand, within GFF2677 at 361.115 kb on + strand, within GFF2677 at 361.115 kb on + strand, within GFF2677 at 361.115 kb on + strand, within GFF2677 at 361.115 kb on + strand, within GFF2677 at 361.345 kb on + strand, within GFF2677 at 361.345 kb on + strand, within GFF2677 at 361.345 kb on + strand, within GFF2677 at 361.345 kb on + strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.346 kb on - strand, within GFF2677 at 361.522 kb on + strand at 361.523 kb on - strand at 361.523 kb on - strand at 361.536 kb on - strand at 361.536 kb on - strand at 361.544 kb on + strand at 361.544 kb on + strand at 361.545 kb on - strand at 361.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 359,137 - GFF2674 0.90 -0.5 359,251 + +0.9 359,251 + +0.3 359,251 + +0.1 359,251 + -1.1 359,251 + +0.2 359,251 + -0.5 359,252 - +0.6 359,252 - -0.8 359,252 - +1.0 359,252 - +0.2 359,252 - +0.4 359,252 - -0.4 359,252 - -0.4 359,252 - +0.5 359,252 - -0.3 359,258 + +0.0 359,258 + -1.1 359,258 + +0.5 359,259 - +0.2 359,259 - +0.7 359,259 - +0.2 359,259 - -0.3 359,259 - +2.4 359,968 - GFF2676 0.15 -1.1 359,968 - GFF2676 0.15 -0.5 360,060 + GFF2676 0.27 -0.9 360,060 + GFF2676 0.27 -0.2 360,060 + GFF2676 0.27 -0.9 360,060 + GFF2676 0.27 +0.9 360,060 + GFF2676 0.27 +0.3 360,061 - GFF2676 0.27 +0.1 360,061 - GFF2676 0.27 +0.6 360,061 - GFF2676 0.27 -0.7 360,061 - GFF2676 0.27 +1.0 360,123 + GFF2676 0.35 -0.3 360,123 + GFF2676 0.35 -0.4 360,123 + GFF2676 0.35 -0.3 360,124 - GFF2676 0.35 -1.1 360,124 - GFF2676 0.35 -0.5 360,250 - GFF2676 0.52 -0.4 360,250 - GFF2676 0.52 +0.1 360,250 - GFF2676 0.52 +0.7 360,408 + GFF2676 0.73 -0.2 360,408 + GFF2676 0.73 -0.6 360,409 - GFF2676 0.73 +0.3 360,409 - GFF2676 0.73 +0.7 360,409 - GFF2676 0.73 +0.7 360,439 - GFF2676 0.77 -0.5 360,543 + -0.7 360,543 + +0.1 360,543 + -1.1 360,543 + -0.3 360,543 + -1.2 360,543 + -0.0 360,543 + -0.1 360,544 - +0.8 360,544 - -0.4 360,544 - -0.2 360,544 - +0.1 360,544 - +0.5 360,544 - -1.4 360,544 - +0.4 360,588 + -0.5 360,589 - +0.3 360,692 + -1.1 361,015 + GFF2677 0.44 -0.5 361,043 + GFF2677 0.47 +1.3 361,043 + GFF2677 0.47 -0.2 361,043 + GFF2677 0.47 +0.6 361,044 - GFF2677 0.47 +0.2 361,112 + GFF2677 0.54 +0.8 361,113 - GFF2677 0.54 +0.1 361,113 - GFF2677 0.54 -0.4 361,113 - GFF2677 0.54 -0.5 361,113 - GFF2677 0.54 -1.3 361,113 - GFF2677 0.54 +1.3 361,113 - GFF2677 0.54 -0.8 361,115 + GFF2677 0.54 -0.2 361,115 + GFF2677 0.54 -1.0 361,115 + GFF2677 0.54 +0.1 361,115 + GFF2677 0.54 -0.3 361,345 + GFF2677 0.79 +0.3 361,345 + GFF2677 0.79 -1.6 361,345 + GFF2677 0.79 +0.7 361,345 + GFF2677 0.79 +0.1 361,346 - GFF2677 0.79 -0.4 361,346 - GFF2677 0.79 -0.0 361,346 - GFF2677 0.79 -0.2 361,346 - GFF2677 0.79 +1.1 361,346 - GFF2677 0.79 +0.1 361,346 - GFF2677 0.79 +0.1 361,346 - GFF2677 0.79 +0.7 361,522 + -0.3 361,523 - -0.8 361,523 - +1.9 361,536 - -1.4 361,536 - +0.6 361,544 + -0.5 361,544 + +0.4 361,545 - -0.9 361,565 + -0.6
Or see this region's nucleotide sequence