Strain Fitness in Xanthobacter sp. DMC5 around GFF2661

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2657 and GFF2658 overlap by 8 nucleotidesGFF2658 and GFF2659 are separated by 96 nucleotidesGFF2659 and GFF2660 are separated by 18 nucleotidesGFF2660 and GFF2661 are separated by 22 nucleotidesGFF2661 and GFF2662 are separated by 217 nucleotides GFF2657 - hypothetical protein, at 344,440 to 345,270 GFF2657 GFF2658 - hypothetical protein, at 345,263 to 345,697 GFF2658 GFF2659 - hypothetical protein, at 345,794 to 345,973 GFF2659 GFF2660 - hypothetical protein, at 345,992 to 346,204 GFF2660 GFF2661 - hypothetical protein, at 346,227 to 346,451 GFF2661 GFF2662 - hypothetical protein, at 346,669 to 347,958 GFF2662 Position (kb) 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1at 345.316 kb on - strand, within GFF2658at 345.316 kb on - strand, within GFF2658at 345.667 kb on + strandat 345.667 kb on + strandat 345.667 kb on + strandat 345.668 kb on - strandat 345.668 kb on - strandat 345.668 kb on - strandat 345.674 kb on + strandat 345.674 kb on + strandat 345.674 kb on + strandat 345.674 kb on + strandat 345.674 kb on + strandat 345.674 kb on + strandat 345.675 kb on - strandat 345.675 kb on - strandat 345.719 kb on + strandat 345.719 kb on + strandat 345.719 kb on + strandat 345.719 kb on + strandat 345.720 kb on - strandat 345.871 kb on + strand, within GFF2659at 345.872 kb on - strand, within GFF2659at 345.952 kb on - strand, within GFF2659at 345.956 kb on + strandat 345.956 kb on + strandat 345.956 kb on + strandat 345.957 kb on - strandat 345.972 kb on - strandat 345.972 kb on - strandat 345.972 kb on - strandat 346.069 kb on + strand, within GFF2660at 346.070 kb on - strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.072 kb on + strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.073 kb on - strand, within GFF2660at 346.149 kb on - strand, within GFF2660at 346.149 kb on - strand, within GFF2660at 346.149 kb on - strand, within GFF2660at 346.225 kb on + strandat 346.225 kb on + strandat 346.225 kb on + strandat 346.225 kb on + strandat 346.225 kb on + strandat 346.225 kb on + strandat 346.226 kb on - strandat 346.226 kb on - strandat 346.226 kb on - strandat 346.226 kb on - strandat 346.297 kb on + strand, within GFF2661at 346.297 kb on + strand, within GFF2661at 346.297 kb on + strand, within GFF2661at 346.297 kb on + strand, within GFF2661at 346.298 kb on - strand, within GFF2661at 346.298 kb on - strand, within GFF2661at 346.298 kb on - strand, within GFF2661at 346.298 kb on - strand, within GFF2661at 346.298 kb on - strand, within GFF2661at 346.391 kb on + strand, within GFF2661at 346.392 kb on - strand, within GFF2661at 346.392 kb on - strand, within GFF2661at 346.427 kb on + strand, within GFF2661at 346.428 kb on - strand, within GFF2661at 346.464 kb on + strandat 346.464 kb on + strandat 346.464 kb on + strandat 346.465 kb on - strandat 346.465 kb on - strandat 346.465 kb on - strandat 346.508 kb on + strandat 346.508 kb on + strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.545 kb on - strandat 346.545 kb on - strandat 346.545 kb on - strandat 346.545 kb on - strandat 346.644 kb on + strandat 346.644 kb on + strandat 346.644 kb on + strandat 346.644 kb on + strandat 346.644 kb on + strandat 346.645 kb on - strandat 346.645 kb on - strandat 346.645 kb on - strandat 346.645 kb on - strandat 346.645 kb on - strandat 346.645 kb on - strandat 346.657 kb on + strandat 346.701 kb on + strandat 346.701 kb on + strandat 347.089 kb on + strand, within GFF2662at 347.089 kb on + strand, within GFF2662at 347.089 kb on + strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.132 kb on - strand, within GFF2662at 347.132 kb on - strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.225 kb on - strand, within GFF2662at 347.351 kb on - strand, within GFF2662at 347.402 kb on - strand, within GFF2662

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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345,316 - GFF2658 0.12 +0.0
345,316 - GFF2658 0.12 +1.1
345,667 + -1.3
345,667 + -0.9
345,667 + +0.7
345,668 - -0.3
345,668 - +0.4
345,668 - +0.6
345,674 + +1.0
345,674 + +0.8
345,674 + -0.1
345,674 + -2.0
345,674 + +0.2
345,674 + -0.1
345,675 - -1.0
345,675 - -0.3
345,719 + -0.4
345,719 + +0.2
345,719 + -0.4
345,719 + +1.6
345,720 - +0.2
345,871 + GFF2659 0.43 +0.2
345,872 - GFF2659 0.43 +0.8
345,952 - GFF2659 0.88 -0.2
345,956 + -0.6
345,956 + -0.1
345,956 + -0.5
345,957 - -0.9
345,972 - +0.4
345,972 - -1.3
345,972 - -0.2
346,069 + GFF2660 0.36 +0.3
346,070 - GFF2660 0.37 +0.4
346,072 + GFF2660 0.38 +0.7
346,072 + GFF2660 0.38 +0.6
346,072 + GFF2660 0.38 -0.7
346,072 + GFF2660 0.38 -0.5
346,072 + GFF2660 0.38 -0.4
346,072 + GFF2660 0.38 +0.9
346,073 - GFF2660 0.38 -0.8
346,073 - GFF2660 0.38 +0.6
346,073 - GFF2660 0.38 -0.3
346,073 - GFF2660 0.38 +0.2
346,073 - GFF2660 0.38 +0.7
346,073 - GFF2660 0.38 +0.1
346,149 - GFF2660 0.74 -0.4
346,149 - GFF2660 0.74 +0.4
346,149 - GFF2660 0.74 +0.3
346,225 + +1.0
346,225 + -0.7
346,225 + -0.5
346,225 + -0.3
346,225 + -0.8
346,225 + +0.3
346,226 - +0.5
346,226 - -0.3
346,226 - +0.6
346,226 - +1.1
346,297 + GFF2661 0.31 -0.4
346,297 + GFF2661 0.31 +0.1
346,297 + GFF2661 0.31 -0.8
346,297 + GFF2661 0.31 +0.4
346,298 - GFF2661 0.32 +0.9
346,298 - GFF2661 0.32 -0.2
346,298 - GFF2661 0.32 -1.4
346,298 - GFF2661 0.32 +1.0
346,298 - GFF2661 0.32 -0.3
346,391 + GFF2661 0.73 -0.8
346,392 - GFF2661 0.73 -0.6
346,392 - GFF2661 0.73 -0.6
346,427 + GFF2661 0.89 +0.1
346,428 - GFF2661 0.89 +0.2
346,464 + +0.3
346,464 + -0.6
346,464 + -0.1
346,465 - -0.2
346,465 - -0.2
346,465 - +1.0
346,508 + -0.9
346,508 + +0.6
346,544 + +0.2
346,544 + +0.4
346,544 + +0.1
346,544 + -1.0
346,545 - -0.6
346,545 - +0.0
346,545 - +0.8
346,545 - -0.4
346,644 + -0.6
346,644 + -0.4
346,644 + -0.3
346,644 + -0.6
346,644 + -2.8
346,645 - +0.9
346,645 - -0.2
346,645 - -0.4
346,645 - -0.3
346,645 - +0.7
346,645 - -0.3
346,657 + +0.5
346,701 + +0.3
346,701 + +0.8
347,089 + GFF2662 0.33 +0.7
347,089 + GFF2662 0.33 -0.6
347,089 + GFF2662 0.33 -0.7
347,090 - GFF2662 0.33 -0.6
347,090 - GFF2662 0.33 -1.0
347,090 - GFF2662 0.33 -2.1
347,090 - GFF2662 0.33 +0.9
347,090 - GFF2662 0.33 +0.5
347,090 - GFF2662 0.33 +0.2
347,090 - GFF2662 0.33 +0.4
347,090 - GFF2662 0.33 +0.2
347,132 - GFF2662 0.36 +1.0
347,132 - GFF2662 0.36 -0.3
347,163 + GFF2662 0.38 +1.1
347,163 + GFF2662 0.38 +0.4
347,163 + GFF2662 0.38 -0.6
347,164 - GFF2662 0.38 -0.9
347,164 - GFF2662 0.38 +1.2
347,164 - GFF2662 0.38 +0.1
347,164 - GFF2662 0.38 +0.2
347,164 - GFF2662 0.38 +1.3
347,225 - GFF2662 0.43 -0.4
347,351 - GFF2662 0.53 -0.8
347,402 - GFF2662 0.57 +1.0

Or see this region's nucleotide sequence