Strain Fitness in Xanthobacter sp. DMC5 around GFF2631

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2630 and GFF2631 are separated by 722 nucleotidesGFF2631 and GFF2632 are separated by 157 nucleotides GFF2630 - hypothetical protein, at 314,902 to 315,726 GFF2630 GFF2631 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 316,449 to 317,309 GFF2631 GFF2632 - hypothetical protein, at 317,467 to 318,333 GFF2632 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1at 315.458 kb on + strand, within GFF2630at 315.458 kb on + strand, within GFF2630at 315.459 kb on - strand, within GFF2630at 315.459 kb on - strand, within GFF2630at 315.459 kb on - strand, within GFF2630at 315.459 kb on - strand, within GFF2630at 315.495 kb on - strand, within GFF2630at 315.596 kb on + strand, within GFF2630at 315.597 kb on - strand, within GFF2630at 315.597 kb on - strand, within GFF2630at 315.597 kb on - strand, within GFF2630at 315.921 kb on + strandat 315.921 kb on + strandat 315.921 kb on + strandat 315.922 kb on - strandat 315.922 kb on - strandat 315.922 kb on - strandat 316.007 kb on + strandat 316.007 kb on + strandat 316.008 kb on - strandat 316.008 kb on - strandat 316.008 kb on - strandat 316.164 kb on + strandat 316.164 kb on + strandat 316.164 kb on + strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.165 kb on - strandat 316.176 kb on + strandat 316.176 kb on + strandat 316.715 kb on - strand, within GFF2631at 316.715 kb on - strand, within GFF2631at 316.870 kb on + strand, within GFF2631at 316.871 kb on - strand, within GFF2631at 316.871 kb on - strand, within GFF2631at 317.014 kb on + strand, within GFF2631at 317.265 kb on + strandat 317.265 kb on + strandat 317.265 kb on + strandat 317.399 kb on + strandat 317.399 kb on + strandat 317.399 kb on + strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.430 kb on + strandat 317.430 kb on + strandat 317.430 kb on + strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.436 kb on - strandat 317.436 kb on - strandat 317.501 kb on + strandat 317.501 kb on + strandat 317.546 kb on + strandat 317.546 kb on + strandat 317.547 kb on - strandat 317.646 kb on - strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.776 kb on + strand, within GFF2632at 317.777 kb on - strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.804 kb on - strand, within GFF2632at 317.951 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 318.232 kb on - strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.287 kb on + strandat 318.307 kb on - strandat 318.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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315,458 + GFF2630 0.67 +0.1
315,458 + GFF2630 0.67 -0.7
315,459 - GFF2630 0.68 -0.1
315,459 - GFF2630 0.68 +0.3
315,459 - GFF2630 0.68 +0.8
315,459 - GFF2630 0.68 +0.7
315,495 - GFF2630 0.72 -0.0
315,596 + GFF2630 0.84 -0.1
315,597 - GFF2630 0.84 -0.0
315,597 - GFF2630 0.84 +0.2
315,597 - GFF2630 0.84 +1.1
315,921 + -0.4
315,921 + +0.2
315,921 + +0.2
315,922 - +0.4
315,922 - -0.2
315,922 - +0.1
316,007 + -0.3
316,007 + -0.0
316,008 - -0.2
316,008 - +0.8
316,008 - -0.4
316,164 + +0.3
316,164 + -0.4
316,164 + +0.0
316,165 - +1.4
316,165 - -0.1
316,165 - +0.2
316,165 - +0.6
316,165 - -0.2
316,165 - -0.7
316,165 - -1.4
316,176 + +0.1
316,176 + -0.6
316,715 - GFF2631 0.31 -0.4
316,715 - GFF2631 0.31 +0.2
316,870 + GFF2631 0.49 -0.3
316,871 - GFF2631 0.49 +0.4
316,871 - GFF2631 0.49 +0.9
317,014 + GFF2631 0.66 -0.6
317,265 + -1.1
317,265 + -0.7
317,265 + +0.1
317,399 + +0.5
317,399 + -0.3
317,399 + -0.4
317,400 - +0.5
317,400 - +0.6
317,400 - -0.2
317,400 - +0.1
317,400 - -1.6
317,430 + -0.2
317,430 + -0.1
317,430 + +0.8
317,431 - +0.4
317,431 - -1.4
317,431 - -0.0
317,431 - -0.1
317,431 - -0.3
317,436 - +1.2
317,436 - -0.4
317,501 + -0.3
317,501 + +0.3
317,546 + -0.2
317,546 + +0.0
317,547 - +0.4
317,646 - GFF2632 0.21 +0.5
317,748 + GFF2632 0.32 -0.4
317,748 + GFF2632 0.32 -1.2
317,748 + GFF2632 0.32 -0.4
317,748 + GFF2632 0.32 +0.3
317,748 + GFF2632 0.32 +0.5
317,748 + GFF2632 0.32 -0.7
317,748 + GFF2632 0.32 -0.6
317,749 - GFF2632 0.33 +0.4
317,749 - GFF2632 0.33 -1.4
317,749 - GFF2632 0.33 -0.0
317,749 - GFF2632 0.33 -0.4
317,749 - GFF2632 0.33 -0.1
317,749 - GFF2632 0.33 -2.5
317,749 - GFF2632 0.33 -0.7
317,749 - GFF2632 0.33 -0.5
317,749 - GFF2632 0.33 -0.1
317,749 - GFF2632 0.33 +0.1
317,749 - GFF2632 0.33 -1.0
317,749 - GFF2632 0.33 -0.8
317,749 - GFF2632 0.33 +0.4
317,750 + GFF2632 0.33 -0.4
317,750 + GFF2632 0.33 -0.2
317,751 - GFF2632 0.33 +0.7
317,751 - GFF2632 0.33 -0.3
317,776 + GFF2632 0.36 -0.3
317,777 - GFF2632 0.36 -0.6
317,803 + GFF2632 0.39 +0.8
317,803 + GFF2632 0.39 -0.1
317,804 - GFF2632 0.39 +0.4
317,951 - GFF2632 0.56 -1.1
317,960 - GFF2632 0.57 +0.6
317,960 - GFF2632 0.57 +0.9
317,989 + GFF2632 0.60 +0.7
317,989 + GFF2632 0.60 +0.1
317,989 + GFF2632 0.60 +0.2
317,989 + GFF2632 0.60 -1.3
317,990 - GFF2632 0.60 +0.5
317,990 - GFF2632 0.60 +0.6
317,990 - GFF2632 0.60 -0.2
317,990 - GFF2632 0.60 +0.8
318,232 - GFF2632 0.88 -0.6
318,244 + GFF2632 0.90 -0.3
318,244 + GFF2632 0.90 +0.3
318,244 + GFF2632 0.90 -0.1
318,245 - GFF2632 0.90 +0.4
318,245 - GFF2632 0.90 +0.5
318,287 + +0.3
318,307 - -1.7
318,307 - +0.5

Or see this region's nucleotide sequence