Strain Fitness in Xanthobacter sp. DMC5 around GFF2512

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2510 and GFF2511 are separated by 251 nucleotidesGFF2511 and GFF2512 are separated by 18 nucleotidesGFF2512 and GFF2513 are separated by 4 nucleotides GFF2510 - Regulator of RpoS, at 171,926 to 172,678 GFF2510 GFF2511 - hypothetical protein, at 172,930 to 173,556 GFF2511 GFF2512 - hypothetical protein, at 173,575 to 174,597 GFF2512 GFF2513 - Multidrug resistance protein MdtN, at 174,602 to 175,582 GFF2513 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.594 kb on - strand, within GFF2510at 172.594 kb on - strand, within GFF2510at 172.789 kb on + strandat 172.789 kb on + strandat 172.844 kb on + strandat 172.844 kb on + strandat 172.845 kb on - strandat 173.008 kb on + strand, within GFF2511at 173.008 kb on + strand, within GFF2511at 173.008 kb on + strand, within GFF2511at 173.008 kb on + strand, within GFF2511at 173.008 kb on + strand, within GFF2511at 173.008 kb on + strand, within GFF2511at 173.009 kb on - strand, within GFF2511at 173.009 kb on - strand, within GFF2511at 173.009 kb on - strand, within GFF2511at 173.009 kb on - strand, within GFF2511at 173.009 kb on - strand, within GFF2511at 173.044 kb on - strand, within GFF2511at 173.088 kb on + strand, within GFF2511at 173.088 kb on + strand, within GFF2511at 173.088 kb on + strand, within GFF2511at 173.089 kb on - strand, within GFF2511at 173.089 kb on - strand, within GFF2511at 173.089 kb on - strand, within GFF2511at 173.089 kb on - strand, within GFF2511at 173.410 kb on + strand, within GFF2511at 173.410 kb on + strand, within GFF2511at 173.411 kb on - strand, within GFF2511at 173.411 kb on - strand, within GFF2511at 173.411 kb on - strand, within GFF2511at 173.507 kb on - strandat 173.576 kb on + strandat 173.772 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.774 kb on + strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.775 kb on - strand, within GFF2512at 173.814 kb on - strand, within GFF2512at 173.843 kb on + strand, within GFF2512at 173.843 kb on + strand, within GFF2512at 173.844 kb on - strand, within GFF2512at 173.844 kb on - strand, within GFF2512at 174.272 kb on + strand, within GFF2512at 174.273 kb on - strand, within GFF2512at 174.285 kb on - strand, within GFF2512at 174.311 kb on + strand, within GFF2512at 174.639 kb on + strandat 174.639 kb on + strandat 174.729 kb on + strand, within GFF2513at 174.729 kb on + strand, within GFF2513at 174.729 kb on + strand, within GFF2513at 174.730 kb on - strand, within GFF2513at 174.777 kb on - strand, within GFF2513at 174.943 kb on - strand, within GFF2513at 174.983 kb on + strand, within GFF2513at 174.984 kb on - strand, within GFF2513at 175.017 kb on + strand, within GFF2513at 175.017 kb on + strand, within GFF2513at 175.017 kb on + strand, within GFF2513at 175.018 kb on - strand, within GFF2513at 175.153 kb on + strand, within GFF2513at 175.154 kb on - strand, within GFF2513at 175.307 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.470 kb on + strand, within GFF2513at 175.471 kb on - strand, within GFF2513at 175.486 kb on - strandat 175.512 kb on + strandat 175.512 kb on + strandat 175.512 kb on + strandat 175.513 kb on - strandat 175.517 kb on + strandat 175.517 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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172,594 - GFF2510 0.89 +0.3
172,594 - GFF2510 0.89 -1.1
172,789 + -0.1
172,789 + -0.5
172,844 + -0.0
172,844 + -1.0
172,845 - +0.3
173,008 + GFF2511 0.12 +0.3
173,008 + GFF2511 0.12 +0.4
173,008 + GFF2511 0.12 -0.3
173,008 + GFF2511 0.12 +0.3
173,008 + GFF2511 0.12 -0.1
173,008 + GFF2511 0.12 -0.1
173,009 - GFF2511 0.13 +0.1
173,009 - GFF2511 0.13 -0.2
173,009 - GFF2511 0.13 -0.5
173,009 - GFF2511 0.13 -0.4
173,009 - GFF2511 0.13 +1.0
173,044 - GFF2511 0.18 -0.2
173,088 + GFF2511 0.25 +0.6
173,088 + GFF2511 0.25 -0.5
173,088 + GFF2511 0.25 -0.3
173,089 - GFF2511 0.25 +0.8
173,089 - GFF2511 0.25 -1.2
173,089 - GFF2511 0.25 +0.2
173,089 - GFF2511 0.25 -0.2
173,410 + GFF2511 0.77 +0.4
173,410 + GFF2511 0.77 +0.5
173,411 - GFF2511 0.77 +0.9
173,411 - GFF2511 0.77 +0.8
173,411 - GFF2511 0.77 +1.4
173,507 - +2.5
173,576 + +1.3
173,772 + GFF2512 0.19 +0.2
173,774 + GFF2512 0.19 +0.7
173,774 + GFF2512 0.19 +0.1
173,774 + GFF2512 0.19 +1.1
173,774 + GFF2512 0.19 -0.5
173,774 + GFF2512 0.19 +0.0
173,774 + GFF2512 0.19 +0.0
173,775 - GFF2512 0.20 +0.9
173,775 - GFF2512 0.20 +1.5
173,775 - GFF2512 0.20 -0.2
173,775 - GFF2512 0.20 +0.1
173,775 - GFF2512 0.20 -0.5
173,775 - GFF2512 0.20 -1.0
173,775 - GFF2512 0.20 +0.8
173,814 - GFF2512 0.23 -1.2
173,843 + GFF2512 0.26 -1.9
173,843 + GFF2512 0.26 -0.4
173,844 - GFF2512 0.26 -1.5
173,844 - GFF2512 0.26 -0.7
174,272 + GFF2512 0.68 +0.0
174,273 - GFF2512 0.68 +1.4
174,285 - GFF2512 0.69 -0.7
174,311 + GFF2512 0.72 +0.8
174,639 + +1.2
174,639 + -1.7
174,729 + GFF2513 0.13 +0.0
174,729 + GFF2513 0.13 +0.2
174,729 + GFF2513 0.13 +0.6
174,730 - GFF2513 0.13 +1.0
174,777 - GFF2513 0.18 -1.1
174,943 - GFF2513 0.35 -1.2
174,983 + GFF2513 0.39 -0.3
174,984 - GFF2513 0.39 -1.2
175,017 + GFF2513 0.42 -0.2
175,017 + GFF2513 0.42 +0.8
175,017 + GFF2513 0.42 +1.1
175,018 - GFF2513 0.42 +0.7
175,153 + GFF2513 0.56 -0.4
175,154 - GFF2513 0.56 -0.8
175,307 + GFF2513 0.72 +0.1
175,470 + GFF2513 0.88 -0.0
175,470 + GFF2513 0.88 +0.0
175,470 + GFF2513 0.88 -0.8
175,470 + GFF2513 0.88 +0.1
175,470 + GFF2513 0.88 +0.0
175,470 + GFF2513 0.88 -0.8
175,470 + GFF2513 0.88 -0.7
175,471 - GFF2513 0.89 +0.0
175,486 - -0.5
175,512 + +0.1
175,512 + +0.4
175,512 + +0.3
175,513 - -0.3
175,517 + -0.0
175,517 + -0.4

Or see this region's nucleotide sequence