Strain Fitness in Xanthobacter sp. DMC5 around GFF2421

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2420 and GFF2421 are separated by 303 nucleotidesGFF2421 and GFF2422 are separated by 119 nucleotides GFF2420 - Porin B, at 75,382 to 76,782 GFF2420 GFF2421 - hypothetical protein, at 77,086 to 77,268 GFF2421 GFF2422 - Ferrichrome outer membrane transporter/phage receptor, at 77,388 to 79,883 GFF2422 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.117 kb on + strand, within GFF2420at 76.117 kb on + strand, within GFF2420at 76.118 kb on - strand, within GFF2420at 76.118 kb on - strand, within GFF2420at 76.118 kb on - strand, within GFF2420at 76.118 kb on - strand, within GFF2420at 76.198 kb on - strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.234 kb on + strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.235 kb on - strand, within GFF2420at 76.324 kb on + strand, within GFF2420at 76.324 kb on + strand, within GFF2420at 76.324 kb on + strand, within GFF2420at 76.336 kb on + strand, within GFF2420at 76.345 kb on + strand, within GFF2420at 76.354 kb on + strand, within GFF2420at 76.354 kb on + strand, within GFF2420at 76.355 kb on - strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.468 kb on + strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.615 kb on + strand, within GFF2420at 76.616 kb on - strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.648 kb on + strandat 76.649 kb on - strandat 76.649 kb on - strandat 76.651 kb on + strandat 76.651 kb on + strandat 76.652 kb on - strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.720 kb on + strandat 76.721 kb on - strandat 76.721 kb on - strandat 76.882 kb on - strandat 76.889 kb on - strandat 76.993 kb on + strandat 77.190 kb on + strand, within GFF2421at 77.190 kb on + strand, within GFF2421at 77.191 kb on - strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.229 kb on - strand, within GFF2421at 77.229 kb on - strand, within GFF2421at 77.266 kb on + strandat 77.266 kb on + strandat 77.266 kb on + strandat 77.267 kb on - strandat 77.267 kb on - strandat 77.323 kb on + strandat 77.346 kb on + strandat 77.356 kb on - strandat 77.398 kb on + strandat 77.399 kb on - strandat 77.399 kb on - strandat 77.413 kb on + strandat 77.434 kb on + strandat 77.434 kb on + strandat 77.435 kb on - strandat 77.435 kb on - strandat 77.435 kb on - strandat 77.453 kb on - strandat 77.468 kb on - strandat 77.471 kb on - strandat 77.484 kb on + strandat 77.484 kb on + strandat 77.484 kb on + strandat 77.485 kb on - strandat 77.486 kb on + strandat 77.487 kb on - strandat 77.521 kb on - strandat 77.521 kb on - strandat 77.573 kb on + strandat 77.575 kb on + strandat 77.575 kb on + strandat 77.576 kb on - strandat 77.638 kb on + strand, within GFF2422at 77.639 kb on - strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.695 kb on + strand, within GFF2422at 77.695 kb on + strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.800 kb on + strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.806 kb on + strand, within GFF2422at 77.806 kb on + strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.816 kb on + strand, within GFF2422at 77.816 kb on + strand, within GFF2422at 77.817 kb on - strand, within GFF2422at 77.819 kb on + strand, within GFF2422at 77.820 kb on - strand, within GFF2422at 77.896 kb on + strand, within GFF2422at 77.897 kb on - strand, within GFF2422at 77.897 kb on - strand, within GFF2422at 77.989 kb on + strand, within GFF2422at 77.989 kb on + strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 78.007 kb on + strand, within GFF2422at 78.007 kb on + strand, within GFF2422at 78.008 kb on - strand, within GFF2422at 78.008 kb on - strand, within GFF2422at 78.083 kb on - strand, within GFF2422at 78.091 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.119 kb on - strand, within GFF2422at 78.119 kb on - strand, within GFF2422at 78.152 kb on - strand, within GFF2422at 78.176 kb on + strand, within GFF2422at 78.185 kb on - strand, within GFF2422at 78.208 kb on + strand, within GFF2422at 78.211 kb on + strand, within GFF2422at 78.211 kb on + strand, within GFF2422

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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76,117 + GFF2420 0.52 +1.2
76,117 + GFF2420 0.52 +0.0
76,118 - GFF2420 0.53 -0.4
76,118 - GFF2420 0.53 +0.9
76,118 - GFF2420 0.53 +0.4
76,118 - GFF2420 0.53 +0.7
76,198 - GFF2420 0.58 -0.3
76,234 + GFF2420 0.61 +0.1
76,234 + GFF2420 0.61 +0.7
76,234 + GFF2420 0.61 +1.3
76,234 + GFF2420 0.61 -0.7
76,234 + GFF2420 0.61 -2.0
76,234 + GFF2420 0.61 +0.7
76,235 - GFF2420 0.61 +0.8
76,235 - GFF2420 0.61 +1.7
76,235 - GFF2420 0.61 -0.5
76,235 - GFF2420 0.61 +0.6
76,235 - GFF2420 0.61 +0.1
76,235 - GFF2420 0.61 -0.8
76,235 - GFF2420 0.61 +1.8
76,324 + GFF2420 0.67 -0.4
76,324 + GFF2420 0.67 +0.5
76,324 + GFF2420 0.67 +0.3
76,336 + GFF2420 0.68 +0.3
76,345 + GFF2420 0.69 -0.7
76,354 + GFF2420 0.69 +0.5
76,354 + GFF2420 0.69 -0.6
76,355 - GFF2420 0.69 +0.5
76,438 + GFF2420 0.75 -0.1
76,438 + GFF2420 0.75 +1.4
76,438 + GFF2420 0.75 +1.2
76,438 + GFF2420 0.75 +1.3
76,438 + GFF2420 0.75 +0.4
76,439 - GFF2420 0.75 +0.6
76,439 - GFF2420 0.75 -0.6
76,439 - GFF2420 0.75 -0.0
76,468 + GFF2420 0.78 -0.4
76,469 - GFF2420 0.78 +0.2
76,469 - GFF2420 0.78 +0.1
76,469 - GFF2420 0.78 -0.5
76,469 - GFF2420 0.78 -0.8
76,469 - GFF2420 0.78 +1.3
76,469 - GFF2420 0.78 +1.2
76,615 + GFF2420 0.88 -0.9
76,616 - GFF2420 0.88 +1.7
76,633 + GFF2420 0.89 +0.9
76,633 + GFF2420 0.89 -0.7
76,633 + GFF2420 0.89 +0.2
76,633 + GFF2420 0.89 +0.9
76,634 - GFF2420 0.89 +1.0
76,634 - GFF2420 0.89 -0.2
76,634 - GFF2420 0.89 +0.5
76,634 - GFF2420 0.89 +0.9
76,648 + +0.3
76,649 - -0.6
76,649 - -0.4
76,651 + +1.1
76,651 + +0.3
76,652 - -1.9
76,699 + +0.0
76,699 + -0.7
76,699 + -0.1
76,699 + +0.6
76,700 - +0.0
76,700 - +0.3
76,700 - +0.6
76,700 - -0.1
76,700 - +0.5
76,720 + +0.5
76,721 - -0.5
76,721 - -0.2
76,882 - -0.3
76,889 - +0.8
76,993 + +0.1
77,190 + GFF2421 0.57 +0.6
77,190 + GFF2421 0.57 -0.1
77,191 - GFF2421 0.57 +0.4
77,228 + GFF2421 0.78 +0.0
77,228 + GFF2421 0.78 +0.1
77,228 + GFF2421 0.78 +0.2
77,229 - GFF2421 0.78 +0.6
77,229 - GFF2421 0.78 +0.2
77,266 + -0.4
77,266 + -0.1
77,266 + +0.6
77,267 - -0.3
77,267 - -0.8
77,323 + +0.5
77,346 + +0.2
77,356 - +1.1
77,398 + -0.5
77,399 - -1.2
77,399 - -0.2
77,413 + -0.1
77,434 + +1.6
77,434 + +0.8
77,435 - -0.1
77,435 - +0.6
77,435 - +0.5
77,453 - -0.3
77,468 - +0.7
77,471 - +1.5
77,484 + +0.4
77,484 + -0.2
77,484 + +0.2
77,485 - -1.0
77,486 + -0.9
77,487 - -0.7
77,521 - +0.2
77,521 - -0.2
77,573 + -0.2
77,575 + -0.3
77,575 + +0.1
77,576 - +0.1
77,638 + GFF2422 0.10 -0.3
77,639 - GFF2422 0.10 +1.3
77,692 + GFF2422 0.12 +0.2
77,692 + GFF2422 0.12 +0.2
77,692 + GFF2422 0.12 -0.4
77,693 - GFF2422 0.12 +0.3
77,693 - GFF2422 0.12 -0.7
77,693 - GFF2422 0.12 +1.0
77,695 + GFF2422 0.12 -0.3
77,695 + GFF2422 0.12 +0.1
77,696 - GFF2422 0.12 -0.2
77,696 - GFF2422 0.12 -0.1
77,696 - GFF2422 0.12 -0.5
77,696 - GFF2422 0.12 -0.3
77,800 + GFF2422 0.17 +0.5
77,801 - GFF2422 0.17 +0.2
77,801 - GFF2422 0.17 +0.6
77,801 - GFF2422 0.17 +0.6
77,801 - GFF2422 0.17 +0.8
77,806 + GFF2422 0.17 +1.4
77,806 + GFF2422 0.17 -0.0
77,807 - GFF2422 0.17 +0.3
77,807 - GFF2422 0.17 -1.0
77,807 - GFF2422 0.17 -0.7
77,807 - GFF2422 0.17 -0.4
77,807 - GFF2422 0.17 -0.4
77,807 - GFF2422 0.17 -0.2
77,807 - GFF2422 0.17 +0.9
77,816 + GFF2422 0.17 -0.2
77,816 + GFF2422 0.17 +0.7
77,817 - GFF2422 0.17 +1.5
77,819 + GFF2422 0.17 +0.7
77,820 - GFF2422 0.17 +0.0
77,896 + GFF2422 0.20 +0.4
77,897 - GFF2422 0.20 -0.9
77,897 - GFF2422 0.20 +1.1
77,989 + GFF2422 0.24 +0.5
77,989 + GFF2422 0.24 -0.2
77,990 - GFF2422 0.24 +0.4
77,990 - GFF2422 0.24 +0.5
77,990 - GFF2422 0.24 +0.1
77,990 - GFF2422 0.24 +0.1
78,007 + GFF2422 0.25 -0.3
78,007 + GFF2422 0.25 +0.6
78,008 - GFF2422 0.25 +1.4
78,008 - GFF2422 0.25 +0.8
78,083 - GFF2422 0.28 -1.2
78,091 + GFF2422 0.28 +0.2
78,118 + GFF2422 0.29 +0.1
78,118 + GFF2422 0.29 -0.9
78,118 + GFF2422 0.29 +0.6
78,118 + GFF2422 0.29 -0.6
78,119 - GFF2422 0.29 -0.7
78,119 - GFF2422 0.29 +0.4
78,152 - GFF2422 0.31 +0.4
78,176 + GFF2422 0.32 +0.8
78,185 - GFF2422 0.32 -0.2
78,208 + GFF2422 0.33 +0.1
78,211 + GFF2422 0.33 +0.2
78,211 + GFF2422 0.33 +0.1

Or see this region's nucleotide sequence