Strain Fitness in Xanthobacter sp. DMC5 around GFF2351

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2349 and GFF2350 are separated by 175 nucleotidesGFF2350 and GFF2351 are separated by 215 nucleotidesGFF2351 and GFF2352 are separated by 93 nucleotidesGFF2352 and GFF2353 are separated by 173 nucleotides GFF2349 - Bifunctional protein PaaZ, at 147 to 2,180 GFF2349 GFF2350 - hypothetical protein, at 2,356 to 2,775 GFF2350 GFF2351 - hypothetical protein, at 2,991 to 5,258 GFF2351 GFF2352 - hypothetical protein, at 5,352 to 5,627 GFF2352 GFF2353 - hypothetical protein, at 5,801 to 7,174 GFF2353 Position (kb) 2 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 2.088 kb on + strandat 2.088 kb on + strandat 2.088 kb on + strandat 2.089 kb on - strandat 2.311 kb on + strandat 2.333 kb on + strandat 2.334 kb on - strandat 2.334 kb on - strandat 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.921 kb on + strandat 2.921 kb on + strandat 2.926 kb on + strandat 3.117 kb on - strandat 3.495 kb on + strand, within GFF2351at 3.495 kb on + strand, within GFF2351at 3.496 kb on - strand, within GFF2351at 3.496 kb on - strand, within GFF2351at 3.496 kb on - strand, within GFF2351at 3.498 kb on - strand, within GFF2351at 3.498 kb on - strand, within GFF2351at 3.498 kb on - strand, within GFF2351at 3.531 kb on + strand, within GFF2351at 3.532 kb on - strand, within GFF2351at 3.533 kb on + strand, within GFF2351at 3.533 kb on + strand, within GFF2351at 3.534 kb on - strand, within GFF2351at 3.619 kb on - strand, within GFF2351at 3.622 kb on - strand, within GFF2351at 3.642 kb on + strand, within GFF2351at 3.642 kb on + strand, within GFF2351at 3.643 kb on - strand, within GFF2351at 3.693 kb on + strand, within GFF2351at 3.693 kb on + strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.694 kb on - strand, within GFF2351at 3.695 kb on + strand, within GFF2351at 3.696 kb on - strand, within GFF2351at 3.723 kb on + strand, within GFF2351at 3.724 kb on - strand, within GFF2351at 3.724 kb on - strand, within GFF2351at 3.762 kb on + strand, within GFF2351at 3.762 kb on + strand, within GFF2351at 3.763 kb on - strand, within GFF2351at 3.850 kb on - strand, within GFF2351at 3.850 kb on - strand, within GFF2351at 3.869 kb on + strand, within GFF2351at 3.870 kb on + strand, within GFF2351at 3.871 kb on - strand, within GFF2351at 3.871 kb on - strand, within GFF2351at 3.872 kb on + strand, within GFF2351at 3.872 kb on + strand, within GFF2351at 3.872 kb on + strand, within GFF2351at 3.872 kb on + strand, within GFF2351at 3.872 kb on + strand, within GFF2351at 4.019 kb on + strand, within GFF2351at 4.019 kb on + strand, within GFF2351at 4.020 kb on - strand, within GFF2351at 4.020 kb on - strand, within GFF2351at 4.110 kb on + strand, within GFF2351at 4.113 kb on + strand, within GFF2351at 4.114 kb on - strand, within GFF2351at 4.218 kb on + strand, within GFF2351at 4.218 kb on + strand, within GFF2351at 4.218 kb on + strand, within GFF2351at 4.219 kb on - strand, within GFF2351at 4.219 kb on - strand, within GFF2351at 4.315 kb on - strand, within GFF2351at 4.434 kb on + strand, within GFF2351at 4.435 kb on - strand, within GFF2351at 4.435 kb on - strand, within GFF2351at 4.477 kb on - strand, within GFF2351at 4.485 kb on + strand, within GFF2351at 4.485 kb on + strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.654 kb on - strand, within GFF2351at 4.656 kb on + strand, within GFF2351at 4.656 kb on + strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.658 kb on - strand, within GFF2351at 4.662 kb on + strand, within GFF2351at 4.662 kb on + strand, within GFF2351at 4.663 kb on - strand, within GFF2351at 4.674 kb on + strand, within GFF2351at 4.674 kb on + strand, within GFF2351at 4.675 kb on - strand, within GFF2351at 4.676 kb on + strand, within GFF2351at 4.734 kb on + strand, within GFF2351at 4.734 kb on + strand, within GFF2351at 4.788 kb on + strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.905 kb on + strand, within GFF2351at 4.906 kb on - strand, within GFF2351at 4.906 kb on - strand, within GFF2351at 5.056 kb on - strandat 5.067 kb on + strandat 5.068 kb on - strandat 5.068 kb on - strandat 5.124 kb on + strandat 5.124 kb on + strandat 5.160 kb on + strandat 5.161 kb on - strandat 5.247 kb on + strandat 5.247 kb on + strandat 5.248 kb on - strandat 5.248 kb on - strandat 5.248 kb on - strandat 5.400 kb on + strand, within GFF2352at 5.400 kb on + strand, within GFF2352at 5.400 kb on + strand, within GFF2352at 5.401 kb on - strand, within GFF2352at 5.401 kb on - strand, within GFF2352at 5.465 kb on - strand, within GFF2352at 5.465 kb on - strand, within GFF2352at 5.482 kb on + strand, within GFF2352at 5.494 kb on + strand, within GFF2352at 5.494 kb on + strand, within GFF2352at 5.560 kb on + strand, within GFF2352at 5.561 kb on - strand, within GFF2352at 5.561 kb on - strand, within GFF2352at 5.715 kb on - strandat 5.776 kb on + strandat 5.776 kb on + strandat 5.776 kb on + strandat 5.777 kb on - strandat 5.777 kb on - strandat 5.777 kb on - strandat 5.870 kb on - strandat 6.019 kb on - strand, within GFF2353at 6.019 kb on - strand, within GFF2353at 6.171 kb on + strand, within GFF2353at 6.171 kb on + strand, within GFF2353at 6.192 kb on + strand, within GFF2353at 6.193 kb on - strand, within GFF2353at 6.246 kb on + strand, within GFF2353at 6.247 kb on - strand, within GFF2353

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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2,088 + -0.3
2,088 + +0.7
2,088 + +0.4
2,089 - +1.4
2,311 + -0.9
2,333 + -0.3
2,334 - +0.3
2,334 - +1.1
2,452 + GFF2350 0.23 -0.2
2,452 + GFF2350 0.23 -0.7
2,452 + GFF2350 0.23 +0.4
2,452 + GFF2350 0.23 -0.9
2,453 - GFF2350 0.23 -0.9
2,453 - GFF2350 0.23 +0.0
2,453 - GFF2350 0.23 -1.7
2,453 - GFF2350 0.23 -0.9
2,921 + -0.3
2,921 + -0.5
2,926 + +1.3
3,117 - +0.5
3,495 + GFF2351 0.22 -0.6
3,495 + GFF2351 0.22 -0.6
3,496 - GFF2351 0.22 +0.5
3,496 - GFF2351 0.22 +0.3
3,496 - GFF2351 0.22 +0.5
3,498 - GFF2351 0.22 +0.1
3,498 - GFF2351 0.22 -0.1
3,498 - GFF2351 0.22 +0.1
3,531 + GFF2351 0.24 -0.4
3,532 - GFF2351 0.24 +0.8
3,533 + GFF2351 0.24 -0.3
3,533 + GFF2351 0.24 -0.4
3,534 - GFF2351 0.24 -0.3
3,619 - GFF2351 0.28 -0.8
3,622 - GFF2351 0.28 -0.3
3,642 + GFF2351 0.29 -0.1
3,642 + GFF2351 0.29 -0.3
3,643 - GFF2351 0.29 +0.3
3,693 + GFF2351 0.31 +0.1
3,693 + GFF2351 0.31 +0.0
3,694 - GFF2351 0.31 +0.2
3,694 - GFF2351 0.31 -1.0
3,694 - GFF2351 0.31 -1.4
3,694 - GFF2351 0.31 +0.7
3,694 - GFF2351 0.31 -1.1
3,694 - GFF2351 0.31 -0.8
3,695 + GFF2351 0.31 +0.3
3,696 - GFF2351 0.31 -0.5
3,723 + GFF2351 0.32 -0.9
3,724 - GFF2351 0.32 -0.7
3,724 - GFF2351 0.32 +1.2
3,762 + GFF2351 0.34 +0.6
3,762 + GFF2351 0.34 +0.6
3,763 - GFF2351 0.34 +0.4
3,850 - GFF2351 0.38 +1.1
3,850 - GFF2351 0.38 -1.1
3,869 + GFF2351 0.39 +1.0
3,870 + GFF2351 0.39 -1.2
3,871 - GFF2351 0.39 +0.8
3,871 - GFF2351 0.39 +0.7
3,872 + GFF2351 0.39 -0.7
3,872 + GFF2351 0.39 -0.4
3,872 + GFF2351 0.39 +0.4
3,872 + GFF2351 0.39 -0.3
3,872 + GFF2351 0.39 +0.6
4,019 + GFF2351 0.45 +0.2
4,019 + GFF2351 0.45 -0.2
4,020 - GFF2351 0.45 +0.1
4,020 - GFF2351 0.45 +0.5
4,110 + GFF2351 0.49 +0.5
4,113 + GFF2351 0.49 -0.5
4,114 - GFF2351 0.50 +0.0
4,218 + GFF2351 0.54 -0.2
4,218 + GFF2351 0.54 +0.4
4,218 + GFF2351 0.54 +0.6
4,219 - GFF2351 0.54 +0.6
4,219 - GFF2351 0.54 -0.7
4,315 - GFF2351 0.58 +0.2
4,434 + GFF2351 0.64 +0.4
4,435 - GFF2351 0.64 -1.0
4,435 - GFF2351 0.64 +0.1
4,477 - GFF2351 0.66 -0.4
4,485 + GFF2351 0.66 -0.4
4,485 + GFF2351 0.66 -0.2
4,486 - GFF2351 0.66 -0.1
4,486 - GFF2351 0.66 +1.0
4,486 - GFF2351 0.66 +0.3
4,549 - GFF2351 0.69 -1.2
4,549 - GFF2351 0.69 -0.8
4,549 - GFF2351 0.69 +0.2
4,549 - GFF2351 0.69 -0.1
4,549 - GFF2351 0.69 -0.9
4,654 - GFF2351 0.73 -0.7
4,656 + GFF2351 0.73 +0.3
4,656 + GFF2351 0.73 +0.3
4,657 - GFF2351 0.73 +0.3
4,657 - GFF2351 0.73 +0.1
4,657 - GFF2351 0.73 +0.6
4,658 - GFF2351 0.74 +0.4
4,662 + GFF2351 0.74 +0.9
4,662 + GFF2351 0.74 +0.4
4,663 - GFF2351 0.74 +0.0
4,674 + GFF2351 0.74 +0.3
4,674 + GFF2351 0.74 +0.3
4,675 - GFF2351 0.74 -0.2
4,676 + GFF2351 0.74 -0.9
4,734 + GFF2351 0.77 +1.9
4,734 + GFF2351 0.77 +0.5
4,788 + GFF2351 0.79 -0.1
4,789 - GFF2351 0.79 -0.1
4,789 - GFF2351 0.79 -0.6
4,789 - GFF2351 0.79 +0.2
4,905 + GFF2351 0.84 +0.4
4,906 - GFF2351 0.84 -0.5
4,906 - GFF2351 0.84 +0.1
5,056 - +1.2
5,067 + -0.7
5,068 - -0.1
5,068 - +0.2
5,124 + +0.3
5,124 + +0.1
5,160 + +0.6
5,161 - -1.0
5,247 + +0.3
5,247 + -0.5
5,248 - -0.4
5,248 - +0.0
5,248 - +0.2
5,400 + GFF2352 0.17 +0.3
5,400 + GFF2352 0.17 +1.0
5,400 + GFF2352 0.17 -0.2
5,401 - GFF2352 0.18 -2.1
5,401 - GFF2352 0.18 +0.4
5,465 - GFF2352 0.41 -1.6
5,465 - GFF2352 0.41 -1.2
5,482 + GFF2352 0.47 -0.2
5,494 + GFF2352 0.51 +0.9
5,494 + GFF2352 0.51 +0.3
5,560 + GFF2352 0.75 -0.8
5,561 - GFF2352 0.76 -0.3
5,561 - GFF2352 0.76 +0.1
5,715 - -0.6
5,776 + +0.2
5,776 + -0.2
5,776 + -2.0
5,777 - +0.6
5,777 - +0.7
5,777 - -1.3
5,870 - +0.4
6,019 - GFF2353 0.16 -0.0
6,019 - GFF2353 0.16 -1.5
6,171 + GFF2353 0.27 -1.7
6,171 + GFF2353 0.27 +0.1
6,192 + GFF2353 0.28 +1.0
6,193 - GFF2353 0.29 +0.3
6,246 + GFF2353 0.32 +0.1
6,247 - GFF2353 0.32 +0.1

Or see this region's nucleotide sequence