Strain Fitness in Xanthobacter sp. DMC5 around GFF2322

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2320 and GFF2321 are separated by 194 nucleotidesGFF2321 and GFF2322 are separated by 73 nucleotidesGFF2322 and GFF2323 overlap by 4 nucleotidesGFF2323 and GFF2324 are separated by 5 nucleotidesGFF2324 and GFF2325 overlap by 4 nucleotides GFF2320 - hypothetical protein, at 1,036,087 to 1,036,383 GFF2320 GFF2321 - ECF RNA polymerase sigma factor EcfG, at 1,036,578 to 1,037,171 GFF2321 GFF2322 - Homoserine O-acetyltransferase, at 1,037,245 to 1,038,450 GFF2322 GFF2323 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 1,038,447 to 1,039,106 GFF2323 GFF2324 - putative endoribonuclease MazF, at 1,039,112 to 1,039,435 GFF2324 GFF2325 - hypothetical protein, at 1,039,432 to 1,039,653 GFF2325 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1036.395 kb on - strandat 1036.458 kb on + strandat 1036.567 kb on + strandat 1036.568 kb on - strandat 1036.614 kb on + strandat 1036.815 kb on + strand, within GFF2321at 1036.816 kb on - strand, within GFF2321at 1036.818 kb on + strand, within GFF2321at 1036.819 kb on - strand, within GFF2321at 1037.399 kb on - strand, within GFF2322at 1037.399 kb on - strand, within GFF2322at 1037.789 kb on - strand, within GFF2322at 1037.915 kb on - strand, within GFF2322at 1037.915 kb on - strand, within GFF2322at 1037.980 kb on + strand, within GFF2322at 1037.980 kb on + strand, within GFF2322at 1037.980 kb on + strand, within GFF2322at 1037.981 kb on - strand, within GFF2322at 1038.079 kb on + strand, within GFF2322at 1038.079 kb on + strand, within GFF2322at 1038.079 kb on + strand, within GFF2322at 1038.079 kb on + strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.080 kb on - strand, within GFF2322at 1038.130 kb on + strand, within GFF2322at 1038.130 kb on + strand, within GFF2322at 1038.131 kb on - strand, within GFF2322at 1038.136 kb on + strand, within GFF2322at 1038.136 kb on + strand, within GFF2322at 1038.136 kb on + strand, within GFF2322at 1038.136 kb on + strand, within GFF2322at 1038.157 kb on + strand, within GFF2322at 1038.158 kb on - strand, within GFF2322at 1038.178 kb on + strand, within GFF2322at 1038.179 kb on - strand, within GFF2322at 1038.179 kb on - strand, within GFF2322at 1038.179 kb on - strand, within GFF2322at 1038.718 kb on - strand, within GFF2323at 1038.738 kb on + strand, within GFF2323at 1038.738 kb on + strand, within GFF2323at 1038.739 kb on - strand, within GFF2323at 1038.739 kb on - strand, within GFF2323at 1038.918 kb on + strand, within GFF2323at 1039.105 kb on - strandat 1039.114 kb on - strandat 1039.392 kb on + strand, within GFF2324

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,036,395 - -0.9
1,036,458 + +0.3
1,036,567 + +1.2
1,036,568 - +0.8
1,036,614 + -0.4
1,036,815 + GFF2321 0.40 +0.3
1,036,816 - GFF2321 0.40 +1.2
1,036,818 + GFF2321 0.40 -0.4
1,036,819 - GFF2321 0.41 -0.7
1,037,399 - GFF2322 0.13 -0.5
1,037,399 - GFF2322 0.13 -0.5
1,037,789 - GFF2322 0.45 -1.6
1,037,915 - GFF2322 0.56 -0.5
1,037,915 - GFF2322 0.56 -1.1
1,037,980 + GFF2322 0.61 -0.3
1,037,980 + GFF2322 0.61 -0.4
1,037,980 + GFF2322 0.61 -0.4
1,037,981 - GFF2322 0.61 -0.3
1,038,079 + GFF2322 0.69 -2.9
1,038,079 + GFF2322 0.69 -2.5
1,038,079 + GFF2322 0.69 -1.2
1,038,079 + GFF2322 0.69 -0.1
1,038,080 - GFF2322 0.69 -0.9
1,038,080 - GFF2322 0.69 -1.8
1,038,080 - GFF2322 0.69 -1.2
1,038,080 - GFF2322 0.69 -2.6
1,038,080 - GFF2322 0.69 -0.8
1,038,080 - GFF2322 0.69 -0.8
1,038,130 + GFF2322 0.73 -1.7
1,038,130 + GFF2322 0.73 -0.8
1,038,131 - GFF2322 0.73 -1.9
1,038,136 + GFF2322 0.74 -0.7
1,038,136 + GFF2322 0.74 -3.3
1,038,136 + GFF2322 0.74 -1.5
1,038,136 + GFF2322 0.74 -0.5
1,038,157 + GFF2322 0.76 -0.9
1,038,158 - GFF2322 0.76 -0.6
1,038,178 + GFF2322 0.77 -1.5
1,038,179 - GFF2322 0.77 -1.9
1,038,179 - GFF2322 0.77 -0.8
1,038,179 - GFF2322 0.77 -1.8
1,038,718 - GFF2323 0.41 -0.7
1,038,738 + GFF2323 0.44 +1.2
1,038,738 + GFF2323 0.44 -1.9
1,038,739 - GFF2323 0.44 -1.2
1,038,739 - GFF2323 0.44 -3.8
1,038,918 + GFF2323 0.71 -0.6
1,039,105 - -0.2
1,039,114 - +1.1
1,039,392 + GFF2324 0.86 -0.3

Or see this region's nucleotide sequence