Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2281 and GFF2282 are separated by 10 nucleotides GFF2282 and GFF2283 are separated by 123 nucleotides GFF2283 and GFF2284 are separated by 66 nucleotides GFF2284 and GFF2285 are separated by 80 nucleotides
GFF2281 - hypothetical protein, at 989,588 to 990,064
GFF2281
GFF2282 - hypothetical protein, at 990,075 to 990,794
GFF2282
GFF2283 - putative inner membrane transporter YedA, at 990,918 to 991,811
GFF2283
GFF2284 - Photosynthetic apparatus regulatory protein RegA, at 991,878 to 992,426
GFF2284
GFF2285 - Sensor histidine kinase RegB, at 992,507 to 993,847
GFF2285
Position (kb) 990
991
992 Strain fitness (log2 ratio) -1
0
1 at 990.032 kb on + strand at 990.032 kb on + strand at 990.062 kb on + strand at 990.063 kb on - strand at 990.437 kb on + strand, within GFF2282 at 990.437 kb on + strand, within GFF2282 at 990.446 kb on - strand, within GFF2282 at 990.446 kb on - strand, within GFF2282 at 990.572 kb on - strand, within GFF2282 at 990.575 kb on - strand, within GFF2282 at 990.770 kb on + strand at 990.770 kb on + strand at 990.771 kb on - strand at 990.879 kb on - strand at 990.990 kb on + strand at 991.436 kb on - strand, within GFF2283 at 991.624 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 992.504 kb on - strand at 992.504 kb on - strand at 992.509 kb on - strand at 992.737 kb on - strand, within GFF2285 at 992.737 kb on - strand, within GFF2285 at 992.737 kb on - strand, within GFF2285
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 990,032 + -0.4 990,032 + +0.7 990,062 + -0.2 990,063 - -0.3 990,437 + GFF2282 0.50 +0.2 990,437 + GFF2282 0.50 +0.7 990,446 - GFF2282 0.52 +0.2 990,446 - GFF2282 0.52 -0.8 990,572 - GFF2282 0.69 -0.2 990,575 - GFF2282 0.69 +0.5 990,770 + +0.9 990,770 + +0.6 990,771 - +0.8 990,879 - -0.7 990,990 + +1.6 991,436 - GFF2283 0.58 +0.6 991,624 - GFF2283 0.79 -0.3 991,675 - GFF2283 0.85 +0.4 991,675 - GFF2283 0.85 +0.9 991,675 - GFF2283 0.85 -1.5 992,504 - -0.6 992,504 - -0.3 992,509 - +1.0 992,737 - GFF2285 0.17 -0.5 992,737 - GFF2285 0.17 -0.8 992,737 - GFF2285 0.17 -0.5
Or see this region's nucleotide sequence