Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2239 and GFF2240 overlap by 4 nucleotides GFF2240 and GFF2241 overlap by 4 nucleotides
GFF2239 - Signal transduction histidine-protein kinase AtoS, at 942,164 to 943,561
GFF2239
GFF2240 - Periplasmic [NiFeSe] hydrogenase small subunit, at 943,558 to 944,568
GFF2240
GFF2241 - Periplasmic [NiFeSe] hydrogenase large subunit, at 944,565 to 946,022
GFF2241
Position (kb) 943
944
945 Strain fitness (log2 ratio) -2
-1
0
1 at 942.735 kb on - strand, within GFF2239 at 942.735 kb on - strand, within GFF2239 at 942.918 kb on - strand, within GFF2239 at 943.229 kb on - strand, within GFF2239 at 943.466 kb on + strand at 943.466 kb on + strand at 943.466 kb on + strand at 943.796 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.921 kb on + strand, within GFF2240 at 943.975 kb on + strand, within GFF2240 at 943.976 kb on - strand, within GFF2240 at 944.137 kb on + strand, within GFF2240 at 944.155 kb on + strand, within GFF2240 at 944.156 kb on - strand, within GFF2240 at 944.200 kb on + strand, within GFF2240 at 944.206 kb on + strand, within GFF2240 at 944.207 kb on - strand, within GFF2240 at 944.934 kb on + strand, within GFF2241 at 944.935 kb on - strand, within GFF2241 at 945.369 kb on + strand, within GFF2241 at 945.370 kb on - strand, within GFF2241 at 945.522 kb on + strand, within GFF2241
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 942,735 - GFF2239 0.41 -1.9 942,735 - GFF2239 0.41 +0.5 942,918 - GFF2239 0.54 -0.9 943,229 - GFF2239 0.76 -0.1 943,466 + -0.1 943,466 + +0.7 943,466 + -0.4 943,796 + GFF2240 0.24 +0.1 943,827 + GFF2240 0.27 +0.1 943,827 + GFF2240 0.27 +0.4 943,827 + GFF2240 0.27 +0.3 943,921 + GFF2240 0.36 -0.1 943,975 + GFF2240 0.41 +0.3 943,976 - GFF2240 0.41 -0.2 944,137 + GFF2240 0.57 -0.6 944,155 + GFF2240 0.59 +1.5 944,156 - GFF2240 0.59 -0.7 944,200 + GFF2240 0.64 +0.1 944,206 + GFF2240 0.64 +0.8 944,207 - GFF2240 0.64 -0.5 944,934 + GFF2241 0.25 -0.4 944,935 - GFF2241 0.25 -0.5 945,369 + GFF2241 0.55 +0.3 945,370 - GFF2241 0.55 -0.2 945,522 + GFF2241 0.66 -0.5
Or see this region's nucleotide sequence