Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2213 and GFF2214 are separated by 173 nucleotides GFF2214 and GFF2215 are separated by 25 nucleotides GFF2215 and GFF2216 are separated by 137 nucleotides
GFF2213 - Pyruvate dehydrogenase E1 component, at 916,616 to 919,054
GFF2213
GFF2214 - Leucine-responsive regulatory protein, at 919,228 to 919,689
GFF2214
GFF2215 - hypothetical protein, at 919,715 to 920,524
GFF2215
GFF2216 - hypothetical protein, at 920,662 to 921,699
GFF2216
Position (kb) 919
920 Strain fitness (log2 ratio) -1
0
1 at 918.345 kb on + strand, within GFF2213 at 918.402 kb on + strand, within GFF2213 at 918.403 kb on - strand, within GFF2213 at 918.403 kb on - strand, within GFF2213 at 918.445 kb on - strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.595 kb on - strand, within GFF2213 at 918.595 kb on - strand, within GFF2213 at 918.693 kb on + strand, within GFF2213 at 918.694 kb on - strand, within GFF2213 at 919.132 kb on + strand at 919.171 kb on - strand at 919.301 kb on + strand, within GFF2214 at 919.490 kb on + strand, within GFF2214 at 919.490 kb on + strand, within GFF2214 at 919.491 kb on - strand, within GFF2214 at 919.519 kb on + strand, within GFF2214 at 919.520 kb on - strand, within GFF2214 at 919.520 kb on - strand, within GFF2214 at 919.544 kb on - strand, within GFF2214 at 919.579 kb on + strand, within GFF2214 at 919.580 kb on - strand, within GFF2214 at 919.580 kb on - strand, within GFF2214 at 919.664 kb on - strand at 919.722 kb on + strand at 919.722 kb on + strand at 919.853 kb on + strand, within GFF2215 at 919.853 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215 at 920.267 kb on + strand, within GFF2215 at 920.268 kb on - strand, within GFF2215 at 920.268 kb on - strand, within GFF2215 at 920.268 kb on - strand, within GFF2215 at 920.310 kb on - strand, within GFF2215 at 920.310 kb on - strand, within GFF2215 at 920.312 kb on - strand, within GFF2215 at 920.418 kb on + strand, within GFF2215 at 920.418 kb on + strand, within GFF2215 at 920.419 kb on - strand, within GFF2215 at 920.450 kb on + strand at 920.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 918,345 + GFF2213 0.71 +0.5 918,402 + GFF2213 0.73 -0.4 918,403 - GFF2213 0.73 -0.1 918,403 - GFF2213 0.73 +0.2 918,445 - GFF2213 0.75 +0.5 918,594 + GFF2213 0.81 +0.6 918,594 + GFF2213 0.81 +0.6 918,594 + GFF2213 0.81 -0.4 918,594 + GFF2213 0.81 +0.4 918,595 - GFF2213 0.81 -0.4 918,595 - GFF2213 0.81 +0.4 918,693 + GFF2213 0.85 +0.1 918,694 - GFF2213 0.85 -1.2 919,132 + -0.5 919,171 - +0.5 919,301 + GFF2214 0.16 +0.7 919,490 + GFF2214 0.57 -1.0 919,490 + GFF2214 0.57 +0.7 919,491 - GFF2214 0.57 +0.8 919,519 + GFF2214 0.63 +0.1 919,520 - GFF2214 0.63 +1.5 919,520 - GFF2214 0.63 +0.4 919,544 - GFF2214 0.68 +0.3 919,579 + GFF2214 0.76 +0.4 919,580 - GFF2214 0.76 -0.4 919,580 - GFF2214 0.76 +1.2 919,664 - +0.1 919,722 + -0.3 919,722 + +0.2 919,853 + GFF2215 0.17 +0.8 919,853 + GFF2215 0.17 -0.7 919,937 + GFF2215 0.27 +0.2 919,937 + GFF2215 0.27 -0.9 919,937 + GFF2215 0.27 +0.5 920,267 + GFF2215 0.68 -0.7 920,268 - GFF2215 0.68 +0.9 920,268 - GFF2215 0.68 -0.3 920,268 - GFF2215 0.68 +0.8 920,310 - GFF2215 0.73 +0.9 920,310 - GFF2215 0.73 -0.9 920,312 - GFF2215 0.74 -0.2 920,418 + GFF2215 0.87 -0.2 920,418 + GFF2215 0.87 +0.5 920,419 - GFF2215 0.87 -0.4 920,450 + +0.3 920,450 + +0.2
Or see this region's nucleotide sequence