Strain Fitness in Xanthobacter sp. DMC5 around GFF2198

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2197 and GFF2198 are separated by 189 nucleotidesGFF2198 and GFF2199 are separated by 19 nucleotides GFF2197 - hypothetical protein, at 895,261 to 896,253 GFF2197 GFF2198 - hypothetical protein, at 896,443 to 897,930 GFF2198 GFF2199 - hypothetical protein, at 897,950 to 899,080 GFF2199 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1 2at 895.515 kb on - strand, within GFF2197at 895.617 kb on - strand, within GFF2197at 895.617 kb on - strand, within GFF2197at 895.917 kb on + strand, within GFF2197at 895.959 kb on - strand, within GFF2197at 895.985 kb on + strand, within GFF2197at 895.986 kb on - strand, within GFF2197at 895.986 kb on - strand, within GFF2197at 896.036 kb on + strand, within GFF2197at 896.207 kb on + strandat 896.208 kb on - strandat 896.208 kb on - strandat 896.208 kb on - strandat 896.288 kb on - strandat 896.288 kb on - strandat 896.524 kb on + strandat 896.524 kb on + strandat 896.524 kb on + strandat 896.525 kb on - strandat 896.525 kb on - strandat 896.533 kb on + strandat 896.533 kb on + strandat 896.587 kb on + strandat 896.587 kb on + strandat 896.588 kb on - strandat 896.609 kb on - strand, within GFF2198at 896.660 kb on - strand, within GFF2198at 896.896 kb on + strand, within GFF2198at 896.896 kb on + strand, within GFF2198at 896.897 kb on - strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.202 kb on - strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.331 kb on + strand, within GFF2198at 897.332 kb on - strand, within GFF2198at 897.332 kb on - strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.346 kb on + strand, within GFF2198at 897.347 kb on - strand, within GFF2198at 897.453 kb on - strand, within GFF2198at 897.453 kb on - strand, within GFF2198at 897.782 kb on - strandat 897.794 kb on - strandat 897.794 kb on - strandat 897.794 kb on - strandat 897.920 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 897.938 kb on - strandat 898.125 kb on - strand, within GFF2199at 898.138 kb on + strand, within GFF2199at 898.139 kb on - strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.190 kb on - strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.262 kb on + strand, within GFF2199at 898.308 kb on + strand, within GFF2199at 898.309 kb on - strand, within GFF2199at 898.322 kb on + strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.574 kb on - strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.596 kb on + strand, within GFF2199at 898.625 kb on + strand, within GFF2199at 898.626 kb on - strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.808 kb on + strand, within GFF2199at 898.809 kb on - strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.927 kb on - strand, within GFF2199at 898.927 kb on - strand, within GFF2199

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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895,515 - GFF2197 0.26 -0.1
895,617 - GFF2197 0.36 +0.1
895,617 - GFF2197 0.36 -1.0
895,917 + GFF2197 0.66 -0.7
895,959 - GFF2197 0.70 +0.6
895,985 + GFF2197 0.73 +0.3
895,986 - GFF2197 0.73 -1.1
895,986 - GFF2197 0.73 +1.7
896,036 + GFF2197 0.78 +0.1
896,207 + -1.8
896,208 - +0.3
896,208 - -0.4
896,208 - -0.1
896,288 - -0.2
896,288 - +0.6
896,524 + +0.8
896,524 + +0.0
896,524 + +0.4
896,525 - +0.9
896,525 - -0.8
896,533 + -0.1
896,533 + -1.2
896,587 + +1.3
896,587 + -0.5
896,588 - -1.2
896,609 - GFF2198 0.11 -0.2
896,660 - GFF2198 0.15 -0.2
896,896 + GFF2198 0.30 -0.6
896,896 + GFF2198 0.30 +0.1
896,897 - GFF2198 0.31 +0.1
896,902 + GFF2198 0.31 -0.7
896,902 + GFF2198 0.31 -0.5
896,902 + GFF2198 0.31 -0.4
896,903 - GFF2198 0.31 -0.2
896,903 - GFF2198 0.31 +0.5
896,903 - GFF2198 0.31 -0.1
896,953 + GFF2198 0.34 -0.2
896,953 + GFF2198 0.34 +0.2
896,953 + GFF2198 0.34 -0.3
897,019 + GFF2198 0.39 +0.1
897,019 + GFF2198 0.39 +0.5
897,020 - GFF2198 0.39 +0.3
897,020 - GFF2198 0.39 -0.0
897,020 - GFF2198 0.39 -0.9
897,020 - GFF2198 0.39 +0.7
897,201 + GFF2198 0.51 +1.9
897,201 + GFF2198 0.51 -1.8
897,202 - GFF2198 0.51 -0.7
897,331 + GFF2198 0.60 -0.5
897,331 + GFF2198 0.60 +0.1
897,331 + GFF2198 0.60 +0.7
897,332 - GFF2198 0.60 -1.3
897,332 - GFF2198 0.60 -0.9
897,346 + GFF2198 0.61 +0.4
897,346 + GFF2198 0.61 -0.4
897,346 + GFF2198 0.61 +0.2
897,346 + GFF2198 0.61 +0.0
897,347 - GFF2198 0.61 +0.6
897,453 - GFF2198 0.68 -0.0
897,453 - GFF2198 0.68 -0.3
897,782 - -1.1
897,794 - +0.3
897,794 - -0.5
897,794 - +1.2
897,920 - -0.9
897,938 - -0.7
897,938 - +0.1
897,938 - -0.6
897,938 - -0.5
898,125 - GFF2199 0.15 -0.6
898,138 + GFF2199 0.17 -0.1
898,139 - GFF2199 0.17 -0.6
898,189 + GFF2199 0.21 -0.4
898,189 + GFF2199 0.21 -1.9
898,189 + GFF2199 0.21 -0.6
898,190 - GFF2199 0.21 -0.9
898,199 + GFF2199 0.22 +0.6
898,199 + GFF2199 0.22 +0.5
898,199 + GFF2199 0.22 -0.1
898,199 + GFF2199 0.22 -0.1
898,199 + GFF2199 0.22 +1.0
898,199 + GFF2199 0.22 -0.2
898,200 - GFF2199 0.22 +0.2
898,200 - GFF2199 0.22 -0.6
898,200 - GFF2199 0.22 -1.3
898,200 - GFF2199 0.22 +0.9
898,200 - GFF2199 0.22 -0.3
898,200 - GFF2199 0.22 -0.8
898,200 - GFF2199 0.22 -0.3
898,254 + GFF2199 0.27 -0.6
898,254 + GFF2199 0.27 +0.7
898,254 + GFF2199 0.27 -0.4
898,255 - GFF2199 0.27 +0.2
898,255 - GFF2199 0.27 -0.3
898,255 - GFF2199 0.27 -0.9
898,255 - GFF2199 0.27 +0.3
898,262 + GFF2199 0.28 +0.5
898,308 + GFF2199 0.32 +0.5
898,309 - GFF2199 0.32 +0.5
898,322 + GFF2199 0.33 +0.4
898,323 - GFF2199 0.33 -1.1
898,323 - GFF2199 0.33 +0.3
898,574 - GFF2199 0.55 +0.1
898,594 + GFF2199 0.57 +0.7
898,594 + GFF2199 0.57 +1.1
898,596 + GFF2199 0.57 +0.2
898,625 + GFF2199 0.60 -0.8
898,626 - GFF2199 0.60 -0.3
898,692 + GFF2199 0.66 +0.7
898,692 + GFF2199 0.66 +0.5
898,808 + GFF2199 0.76 +0.5
898,809 - GFF2199 0.76 +0.7
898,926 + GFF2199 0.86 -0.9
898,926 + GFF2199 0.86 +0.9
898,926 + GFF2199 0.86 -0.3
898,926 + GFF2199 0.86 +1.4
898,927 - GFF2199 0.86 -0.1
898,927 - GFF2199 0.86 +0.4

Or see this region's nucleotide sequence