Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2193 and GFF2194 are separated by 611 nucleotides GFF2194 and GFF2195 are separated by 135 nucleotides GFF2195 and GFF2196 are separated by 314 nucleotides
GFF2193 - Prophage integrase IntA, at 890,617 to 891,846
GFF2193
GFF2194 - Prophage integrase IntA, at 892,458 to 893,714
GFF2194
GFF2195 - hypothetical protein, at 893,850 to 894,074
GFF2195
GFF2196 - hypothetical protein, at 894,389 to 894,682
GFF2196
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.504 kb on + strand, within GFF2193 at 891.574 kb on - strand, within GFF2193 at 891.610 kb on - strand, within GFF2193 at 891.762 kb on - strand at 891.846 kb on + strand at 891.890 kb on + strand at 892.044 kb on + strand at 892.092 kb on + strand at 892.092 kb on + strand at 892.092 kb on + strand at 892.093 kb on - strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.095 kb on - strand at 892.095 kb on - strand at 892.095 kb on - strand at 892.199 kb on + strand at 892.199 kb on + strand at 892.200 kb on - strand at 892.276 kb on - strand at 892.292 kb on + strand at 892.293 kb on - strand at 892.294 kb on + strand at 892.294 kb on + strand at 892.442 kb on + strand at 892.442 kb on + strand at 892.542 kb on + strand at 892.542 kb on + strand at 892.790 kb on + strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 892.860 kb on + strand, within GFF2194 at 893.327 kb on - strand, within GFF2194 at 893.688 kb on - strand at 893.773 kb on - strand at 894.002 kb on + strand, within GFF2195 at 894.166 kb on + strand at 894.166 kb on + strand at 894.167 kb on - strand at 894.167 kb on - strand at 894.167 kb on - strand at 894.232 kb on + strand at 894.232 kb on + strand at 894.232 kb on + strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.364 kb on - strand at 894.602 kb on - strand, within GFF2196
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 891,504 + GFF2193 0.72 -0.3 891,574 - GFF2193 0.78 -1.7 891,610 - GFF2193 0.81 -0.2 891,762 - +0.2 891,846 + -0.3 891,890 + +0.1 892,044 + -0.3 892,092 + +0.7 892,092 + -2.2 892,092 + -0.9 892,093 - -0.4 892,094 + +0.3 892,094 + +0.6 892,094 + +1.9 892,094 + -1.7 892,095 - -0.8 892,095 - -0.2 892,095 - -0.8 892,199 + +0.3 892,199 + +1.3 892,200 - +0.9 892,276 - +0.1 892,292 + -0.5 892,293 - -0.3 892,294 + +0.6 892,294 + -2.6 892,442 + +0.3 892,442 + -0.3 892,542 + -0.1 892,542 + +0.2 892,790 + GFF2194 0.26 -1.7 892,791 - GFF2194 0.26 -0.9 892,791 - GFF2194 0.26 -0.9 892,791 - GFF2194 0.26 -0.6 892,791 - GFF2194 0.26 -1.9 892,860 + GFF2194 0.32 -1.1 892,860 + GFF2194 0.32 +0.9 892,860 + GFF2194 0.32 -0.4 892,860 + GFF2194 0.32 -0.0 892,860 + GFF2194 0.32 -0.1 892,860 + GFF2194 0.32 +1.1 892,860 + GFF2194 0.32 -0.7 893,327 - GFF2194 0.69 +0.0 893,688 - +1.0 893,773 - -0.2 894,002 + GFF2195 0.68 +0.2 894,166 + -0.7 894,166 + -0.5 894,167 - +0.5 894,167 - +1.4 894,167 - -0.0 894,232 + -0.1 894,232 + -1.1 894,232 + -0.5 894,233 - +0.9 894,233 - -1.1 894,233 - -0.1 894,233 - -0.6 894,233 - +0.2 894,364 - +0.1 894,602 - GFF2196 0.72 -0.4
Or see this region's nucleotide sequence