Strain Fitness in Xanthobacter sp. DMC5 around GFF2167

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2166 and GFF2167 are separated by 476 nucleotidesGFF2167 and GFF2168 are separated by 77 nucleotidesGFF2168 and GFF2169 are separated by 30 nucleotides GFF2166 - hypothetical protein, at 862,541 to 863,398 GFF2166 GFF2167 - Catecholate siderophore receptor Fiu, at 863,875 to 866,220 GFF2167 GFF2168 - PKHD-type hydroxylase, at 866,298 to 866,981 GFF2168 GFF2169 - hypothetical protein, at 867,012 to 867,455 GFF2169 Position (kb) 863 864 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 863.202 kb on + strand, within GFF2166at 863.203 kb on - strand, within GFF2166at 863.256 kb on + strand, within GFF2166at 863.257 kb on - strand, within GFF2166at 863.257 kb on - strand, within GFF2166at 863.257 kb on - strand, within GFF2166at 863.257 kb on - strand, within GFF2166at 863.285 kb on - strand, within GFF2166at 863.379 kb on + strandat 863.379 kb on + strandat 863.520 kb on - strandat 863.521 kb on + strandat 863.522 kb on - strandat 863.530 kb on + strandat 863.531 kb on - strandat 863.551 kb on - strandat 863.567 kb on - strandat 863.589 kb on - strandat 863.589 kb on - strandat 863.607 kb on - strandat 863.636 kb on + strandat 863.636 kb on + strandat 863.637 kb on - strandat 863.637 kb on - strandat 863.637 kb on - strandat 863.638 kb on + strandat 863.669 kb on - strandat 863.780 kb on - strandat 864.311 kb on - strand, within GFF2167at 864.311 kb on - strand, within GFF2167at 864.439 kb on + strand, within GFF2167at 864.440 kb on - strand, within GFF2167at 864.440 kb on - strand, within GFF2167at 864.475 kb on + strand, within GFF2167at 864.589 kb on + strand, within GFF2167at 864.590 kb on - strand, within GFF2167at 864.640 kb on + strand, within GFF2167at 864.640 kb on + strand, within GFF2167at 864.641 kb on - strand, within GFF2167at 864.641 kb on - strand, within GFF2167at 864.649 kb on + strand, within GFF2167at 864.650 kb on - strand, within GFF2167at 864.650 kb on - strand, within GFF2167at 864.650 kb on - strand, within GFF2167at 864.650 kb on - strand, within GFF2167at 864.650 kb on - strand, within GFF2167at 864.655 kb on + strand, within GFF2167at 864.682 kb on + strand, within GFF2167at 864.682 kb on + strand, within GFF2167at 864.781 kb on + strand, within GFF2167at 864.787 kb on - strand, within GFF2167at 864.835 kb on + strand, within GFF2167at 864.836 kb on - strand, within GFF2167at 864.890 kb on - strand, within GFF2167at 864.890 kb on - strand, within GFF2167at 864.892 kb on + strand, within GFF2167at 864.892 kb on + strand, within GFF2167at 864.892 kb on + strand, within GFF2167at 864.892 kb on + strand, within GFF2167at 864.970 kb on + strand, within GFF2167at 864.970 kb on + strand, within GFF2167at 864.971 kb on - strand, within GFF2167at 864.971 kb on - strand, within GFF2167at 864.971 kb on - strand, within GFF2167at 865.220 kb on - strand, within GFF2167at 865.220 kb on - strand, within GFF2167at 865.220 kb on - strand, within GFF2167at 865.220 kb on - strand, within GFF2167at 865.227 kb on + strand, within GFF2167at 865.227 kb on + strand, within GFF2167at 865.228 kb on - strand, within GFF2167at 865.291 kb on + strand, within GFF2167at 865.291 kb on + strand, within GFF2167at 865.292 kb on - strand, within GFF2167at 865.372 kb on + strand, within GFF2167at 865.372 kb on + strand, within GFF2167at 865.372 kb on + strand, within GFF2167at 865.385 kb on - strand, within GFF2167at 865.385 kb on - strand, within GFF2167at 865.450 kb on + strand, within GFF2167at 865.450 kb on + strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.452 kb on + strand, within GFF2167at 865.453 kb on - strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.523 kb on - strand, within GFF2167at 865.523 kb on - strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.720 kb on + strand, within GFF2167at 865.720 kb on + strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.840 kb on + strand, within GFF2167at 865.844 kb on - strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.880 kb on - strand, within GFF2167at 865.880 kb on - strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 866.005 kb on + strandat 866.005 kb on + strandat 866.005 kb on + strandat 866.005 kb on + strandat 866.006 kb on - strandat 866.006 kb on - strandat 866.018 kb on - strandat 866.018 kb on - strandat 866.083 kb on + strandat 866.098 kb on + strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.240 kb on + strandat 866.241 kb on - strandat 866.423 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.477 kb on - strand, within GFF2168at 866.477 kb on - strand, within GFF2168at 866.557 kb on - strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.564 kb on - strand, within GFF2168at 866.676 kb on + strand, within GFF2168at 866.754 kb on + strand, within GFF2168at 866.755 kb on - strand, within GFF2168at 866.865 kb on + strand, within GFF2168at 866.865 kb on + strand, within GFF2168at 866.866 kb on - strand, within GFF2168at 866.866 kb on - strand, within GFF2168at 866.946 kb on + strandat 866.946 kb on + strandat 866.946 kb on + strandat 866.947 kb on - strandat 866.947 kb on - strandat 867.013 kb on + strandat 867.013 kb on + strandat 867.014 kb on - strandat 867.014 kb on - strandat 867.076 kb on + strand, within GFF2169at 867.076 kb on + strand, within GFF2169at 867.077 kb on - strand, within GFF2169at 867.077 kb on - strand, within GFF2169at 867.107 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.212 kb on - strand, within GFF2169

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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863,202 + GFF2166 0.77 +0.2
863,203 - GFF2166 0.77 -0.4
863,256 + GFF2166 0.83 -0.6
863,257 - GFF2166 0.83 -0.3
863,257 - GFF2166 0.83 -0.3
863,257 - GFF2166 0.83 -0.2
863,257 - GFF2166 0.83 -0.7
863,285 - GFF2166 0.87 +0.6
863,379 + -0.7
863,379 + -0.8
863,520 - -2.0
863,521 + -1.6
863,522 - -0.9
863,530 + +0.2
863,531 - -0.5
863,551 - -0.5
863,567 - -0.1
863,589 - +1.0
863,589 - -1.2
863,607 - -2.8
863,636 + -0.0
863,636 + +0.1
863,637 - +0.4
863,637 - -0.2
863,637 - -1.5
863,638 + +0.3
863,669 - +0.3
863,780 - -0.2
864,311 - GFF2167 0.19 -0.7
864,311 - GFF2167 0.19 -0.2
864,439 + GFF2167 0.24 -1.0
864,440 - GFF2167 0.24 +0.7
864,440 - GFF2167 0.24 -0.3
864,475 + GFF2167 0.26 -1.1
864,589 + GFF2167 0.30 -0.3
864,590 - GFF2167 0.30 -0.7
864,640 + GFF2167 0.33 -2.3
864,640 + GFF2167 0.33 -0.1
864,641 - GFF2167 0.33 -2.0
864,641 - GFF2167 0.33 -0.3
864,649 + GFF2167 0.33 +0.2
864,650 - GFF2167 0.33 +0.1
864,650 - GFF2167 0.33 +0.4
864,650 - GFF2167 0.33 -0.1
864,650 - GFF2167 0.33 -0.3
864,650 - GFF2167 0.33 -0.3
864,655 + GFF2167 0.33 +0.1
864,682 + GFF2167 0.34 +0.3
864,682 + GFF2167 0.34 -0.3
864,781 + GFF2167 0.39 -1.0
864,787 - GFF2167 0.39 -1.0
864,835 + GFF2167 0.41 +0.3
864,836 - GFF2167 0.41 -1.9
864,890 - GFF2167 0.43 -0.2
864,890 - GFF2167 0.43 +0.0
864,892 + GFF2167 0.43 +2.1
864,892 + GFF2167 0.43 -0.5
864,892 + GFF2167 0.43 +0.2
864,892 + GFF2167 0.43 -0.1
864,970 + GFF2167 0.47 -0.6
864,970 + GFF2167 0.47 -0.9
864,971 - GFF2167 0.47 +0.1
864,971 - GFF2167 0.47 +0.7
864,971 - GFF2167 0.47 -0.9
865,220 - GFF2167 0.57 -0.8
865,220 - GFF2167 0.57 -0.2
865,220 - GFF2167 0.57 +0.4
865,220 - GFF2167 0.57 +0.2
865,227 + GFF2167 0.58 +0.5
865,227 + GFF2167 0.58 +0.2
865,228 - GFF2167 0.58 +1.4
865,291 + GFF2167 0.60 +0.0
865,291 + GFF2167 0.60 +0.8
865,292 - GFF2167 0.60 -0.4
865,372 + GFF2167 0.64 -0.1
865,372 + GFF2167 0.64 -0.1
865,372 + GFF2167 0.64 +0.0
865,385 - GFF2167 0.64 -0.3
865,385 - GFF2167 0.64 +0.2
865,450 + GFF2167 0.67 +0.9
865,450 + GFF2167 0.67 +0.0
865,451 - GFF2167 0.67 -1.4
865,451 - GFF2167 0.67 +0.9
865,451 - GFF2167 0.67 +0.7
865,451 - GFF2167 0.67 -1.0
865,452 + GFF2167 0.67 -0.8
865,453 - GFF2167 0.67 +0.3
865,522 + GFF2167 0.70 +1.0
865,522 + GFF2167 0.70 +0.2
865,522 + GFF2167 0.70 +1.4
865,522 + GFF2167 0.70 -0.1
865,523 - GFF2167 0.70 -0.3
865,523 - GFF2167 0.70 -0.1
865,525 + GFF2167 0.70 -0.2
865,525 + GFF2167 0.70 +0.4
865,525 + GFF2167 0.70 +2.8
865,526 - GFF2167 0.70 +0.7
865,526 - GFF2167 0.70 -1.3
865,526 - GFF2167 0.70 +0.7
865,526 - GFF2167 0.70 +0.8
865,720 + GFF2167 0.79 -0.2
865,720 + GFF2167 0.79 +1.5
865,721 - GFF2167 0.79 -0.0
865,721 - GFF2167 0.79 +0.1
865,721 - GFF2167 0.79 +0.9
865,840 + GFF2167 0.84 -1.1
865,844 - GFF2167 0.84 +0.6
865,879 + GFF2167 0.85 +0.3
865,879 + GFF2167 0.85 -0.1
865,879 + GFF2167 0.85 -0.8
865,880 - GFF2167 0.85 +0.0
865,880 - GFF2167 0.85 -0.3
865,936 + GFF2167 0.88 -0.1
865,936 + GFF2167 0.88 +1.5
865,936 + GFF2167 0.88 -0.9
865,937 - GFF2167 0.88 -0.4
865,937 - GFF2167 0.88 -0.2
865,937 - GFF2167 0.88 -0.2
865,937 - GFF2167 0.88 -0.2
865,937 - GFF2167 0.88 -0.8
865,937 - GFF2167 0.88 -1.9
866,005 + -0.5
866,005 + +0.3
866,005 + -0.9
866,005 + +0.2
866,006 - +0.0
866,006 - -0.6
866,018 - -0.7
866,018 - -1.4
866,083 + +0.4
866,098 + +0.1
866,219 - -1.3
866,219 - -0.1
866,219 - -0.3
866,219 - +0.8
866,240 + +0.0
866,241 - -0.5
866,423 + GFF2168 0.18 +0.1
866,476 + GFF2168 0.26 +1.4
866,476 + GFF2168 0.26 +0.4
866,476 + GFF2168 0.26 +0.5
866,477 - GFF2168 0.26 -1.1
866,477 - GFF2168 0.26 -0.1
866,557 - GFF2168 0.38 -0.1
866,563 + GFF2168 0.39 -1.4
866,563 + GFF2168 0.39 +1.0
866,563 + GFF2168 0.39 -0.3
866,564 - GFF2168 0.39 +0.0
866,676 + GFF2168 0.55 -0.8
866,754 + GFF2168 0.67 -0.7
866,755 - GFF2168 0.67 +0.4
866,865 + GFF2168 0.83 -1.0
866,865 + GFF2168 0.83 -0.2
866,866 - GFF2168 0.83 -0.2
866,866 - GFF2168 0.83 +0.0
866,946 + +0.4
866,946 + +1.3
866,946 + -1.5
866,947 - +1.1
866,947 - -1.9
867,013 + +0.2
867,013 + -0.7
867,014 - +0.4
867,014 - -0.1
867,076 + GFF2169 0.14 +0.7
867,076 + GFF2169 0.14 +0.2
867,077 - GFF2169 0.15 +1.0
867,077 - GFF2169 0.15 -0.4
867,107 + GFF2169 0.21 -1.3
867,211 + GFF2169 0.45 -0.4
867,211 + GFF2169 0.45 -2.3
867,211 + GFF2169 0.45 +0.8
867,212 - GFF2169 0.45 -0.3

Or see this region's nucleotide sequence