Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2143 and GFF2144 are separated by 361 nucleotides GFF2144 and GFF2145 are separated by 5 nucleotides GFF2145 and GFF2146 are separated by 97 nucleotides
GFF2143 - HTH-type transcriptional regulator GbpR, at 831,959 to 832,984
GFF2143
GFF2144 - Nitrilase, at 833,346 to 834,278
GFF2144
GFF2145 - hypothetical protein, at 834,284 to 834,970
GFF2145
GFF2146 - hypothetical protein, at 835,068 to 836,120
GFF2146
Position (kb) 833
834
835 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.806 kb on - strand, within GFF2143 at 832.875 kb on + strand, within GFF2143 at 833.002 kb on + strand at 833.002 kb on + strand at 833.002 kb on + strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.067 kb on - strand at 833.197 kb on + strand at 833.198 kb on - strand at 833.217 kb on + strand at 833.217 kb on + strand at 833.217 kb on + strand at 833.218 kb on - strand at 833.218 kb on - strand at 833.347 kb on + strand at 833.423 kb on - strand at 833.460 kb on - strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.749 kb on + strand, within GFF2144 at 833.750 kb on - strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.926 kb on + strand, within GFF2144 at 833.927 kb on - strand, within GFF2144 at 833.986 kb on - strand, within GFF2144 at 834.058 kb on + strand, within GFF2144 at 834.059 kb on - strand, within GFF2144 at 834.156 kb on + strand, within GFF2144 at 834.447 kb on + strand, within GFF2145 at 834.792 kb on + strand, within GFF2145 at 834.792 kb on + strand, within GFF2145 at 834.961 kb on + strand at 835.095 kb on + strand at 835.095 kb on + strand at 835.096 kb on - strand at 835.096 kb on - strand at 835.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 832,806 - GFF2143 0.83 -0.2 832,875 + GFF2143 0.89 -0.3 833,002 + +0.6 833,002 + +0.8 833,002 + -0.3 833,003 - +1.9 833,003 - -0.3 833,003 - +0.0 833,003 - -0.0 833,067 - +0.7 833,197 + -0.5 833,198 - -0.5 833,217 + +0.5 833,217 + +0.5 833,217 + +0.0 833,218 - -2.0 833,218 - +0.1 833,347 + -0.8 833,423 - +0.5 833,460 - GFF2144 0.12 -0.7 833,602 + GFF2144 0.27 -0.4 833,602 + GFF2144 0.27 +0.6 833,602 + GFF2144 0.27 -0.1 833,603 - GFF2144 0.28 -0.0 833,603 - GFF2144 0.28 +0.2 833,603 - GFF2144 0.28 +0.6 833,603 - GFF2144 0.28 -0.5 833,603 - GFF2144 0.28 -0.0 833,603 - GFF2144 0.28 -0.9 833,749 + GFF2144 0.43 -1.0 833,750 - GFF2144 0.43 -0.1 833,752 + GFF2144 0.44 +0.6 833,752 + GFF2144 0.44 -1.3 833,752 + GFF2144 0.44 -1.1 833,752 + GFF2144 0.44 +0.0 833,752 + GFF2144 0.44 -0.6 833,776 + GFF2144 0.46 -0.5 833,776 + GFF2144 0.46 +0.3 833,776 + GFF2144 0.46 -0.5 833,776 + GFF2144 0.46 +1.1 833,776 + GFF2144 0.46 +0.7 833,776 + GFF2144 0.46 -1.1 833,776 + GFF2144 0.46 -0.4 833,776 + GFF2144 0.46 -0.2 833,776 + GFF2144 0.46 -0.3 833,776 + GFF2144 0.46 -1.1 833,776 + GFF2144 0.46 -1.4 833,776 + GFF2144 0.46 +0.2 833,776 + GFF2144 0.46 -0.5 833,777 - GFF2144 0.46 -0.1 833,777 - GFF2144 0.46 -1.0 833,777 - GFF2144 0.46 +0.6 833,777 - GFF2144 0.46 -0.6 833,777 - GFF2144 0.46 -0.6 833,777 - GFF2144 0.46 -2.2 833,777 - GFF2144 0.46 -0.3 833,777 - GFF2144 0.46 -0.2 833,926 + GFF2144 0.62 -0.4 833,927 - GFF2144 0.62 +1.7 833,986 - GFF2144 0.69 +1.2 834,058 + GFF2144 0.76 +0.1 834,059 - GFF2144 0.76 -0.6 834,156 + GFF2144 0.87 +0.4 834,447 + GFF2145 0.24 -1.0 834,792 + GFF2145 0.74 +0.1 834,792 + GFF2145 0.74 +1.1 834,961 + -0.7 835,095 + -0.2 835,095 + +0.1 835,096 - -0.5 835,096 - -1.0 835,096 - -0.3
Or see this region's nucleotide sequence