Strain Fitness in Xanthobacter sp. DMC5 around GFF2133

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2131 and GFF2132 are separated by 272 nucleotidesGFF2132 and GFF2133 are separated by 131 nucleotidesGFF2133 and GFF2134 are separated by 102 nucleotides GFF2131 - hypothetical protein, at 817,073 to 817,453 GFF2131 GFF2132 - hypothetical protein, at 817,726 to 817,971 GFF2132 GFF2133 - hypothetical protein, at 818,103 to 819,020 GFF2133 GFF2134 - Prophage integrase IntA, at 819,123 to 820,334 GFF2134 Position (kb) 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2at 817.147 kb on - strand, within GFF2131at 817.446 kb on + strandat 817.446 kb on + strandat 817.892 kb on + strand, within GFF2132at 817.892 kb on + strand, within GFF2132at 817.916 kb on + strand, within GFF2132at 817.916 kb on + strand, within GFF2132at 817.917 kb on - strand, within GFF2132at 818.058 kb on + strandat 818.059 kb on - strandat 818.059 kb on - strandat 818.074 kb on + strandat 818.075 kb on - strandat 818.090 kb on + strandat 818.091 kb on - strandat 818.271 kb on + strand, within GFF2133at 818.272 kb on - strand, within GFF2133at 818.272 kb on - strand, within GFF2133at 818.272 kb on - strand, within GFF2133at 818.275 kb on + strand, within GFF2133at 818.275 kb on + strand, within GFF2133at 818.275 kb on + strand, within GFF2133at 818.276 kb on - strand, within GFF2133at 818.276 kb on - strand, within GFF2133at 818.276 kb on - strand, within GFF2133at 818.302 kb on - strand, within GFF2133at 818.329 kb on - strand, within GFF2133at 818.337 kb on + strand, within GFF2133at 818.337 kb on + strand, within GFF2133at 818.413 kb on + strand, within GFF2133at 818.463 kb on + strand, within GFF2133at 818.464 kb on - strand, within GFF2133at 818.465 kb on + strand, within GFF2133at 818.466 kb on - strand, within GFF2133at 818.467 kb on + strand, within GFF2133at 818.543 kb on + strand, within GFF2133at 818.555 kb on + strand, within GFF2133at 818.556 kb on - strand, within GFF2133at 818.673 kb on + strand, within GFF2133at 818.728 kb on - strand, within GFF2133at 818.728 kb on - strand, within GFF2133at 818.728 kb on - strand, within GFF2133at 818.753 kb on + strand, within GFF2133at 818.839 kb on + strand, within GFF2133at 818.840 kb on - strand, within GFF2133at 818.889 kb on + strand, within GFF2133at 818.889 kb on + strand, within GFF2133at 818.889 kb on + strand, within GFF2133at 818.889 kb on + strand, within GFF2133at 818.910 kb on + strand, within GFF2133at 818.946 kb on + strandat 818.947 kb on - strandat 818.989 kb on + strandat 819.124 kb on + strandat 819.125 kb on - strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.178 kb on + strandat 819.179 kb on - strandat 819.179 kb on - strandat 819.179 kb on - strandat 819.179 kb on - strandat 819.179 kb on - strandat 819.216 kb on + strandat 819.235 kb on + strandat 819.263 kb on + strand, within GFF2134at 819.263 kb on + strand, within GFF2134at 819.264 kb on - strand, within GFF2134at 819.302 kb on - strand, within GFF2134at 819.481 kb on - strand, within GFF2134at 819.823 kb on - strand, within GFF2134at 819.823 kb on - strand, within GFF2134at 819.933 kb on - strand, within GFF2134at 819.952 kb on + strand, within GFF2134at 819.953 kb on - strand, within GFF2134at 819.953 kb on - strand, within GFF2134at 819.953 kb on - strand, within GFF2134at 819.953 kb on - strand, within GFF2134

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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817,147 - GFF2131 0.19 -1.1
817,446 + -0.2
817,446 + +0.2
817,892 + GFF2132 0.67 +0.3
817,892 + GFF2132 0.67 +0.6
817,916 + GFF2132 0.77 +0.2
817,916 + GFF2132 0.77 +0.9
817,917 - GFF2132 0.78 +1.1
818,058 + -0.6
818,059 - +0.2
818,059 - +0.4
818,074 + -0.8
818,075 - -0.7
818,090 + -2.2
818,091 - -0.4
818,271 + GFF2133 0.18 +0.0
818,272 - GFF2133 0.18 -0.2
818,272 - GFF2133 0.18 +0.4
818,272 - GFF2133 0.18 -0.4
818,275 + GFF2133 0.19 +0.6
818,275 + GFF2133 0.19 -0.6
818,275 + GFF2133 0.19 +0.6
818,276 - GFF2133 0.19 -1.7
818,276 - GFF2133 0.19 +0.4
818,276 - GFF2133 0.19 -0.1
818,302 - GFF2133 0.22 -0.8
818,329 - GFF2133 0.25 -0.2
818,337 + GFF2133 0.25 +0.3
818,337 + GFF2133 0.25 +0.2
818,413 + GFF2133 0.34 -0.4
818,463 + GFF2133 0.39 -0.1
818,464 - GFF2133 0.39 +0.2
818,465 + GFF2133 0.39 -1.8
818,466 - GFF2133 0.40 -0.6
818,467 + GFF2133 0.40 +0.5
818,543 + GFF2133 0.48 -0.5
818,555 + GFF2133 0.49 +0.2
818,556 - GFF2133 0.49 -1.3
818,673 + GFF2133 0.62 -0.9
818,728 - GFF2133 0.68 +1.7
818,728 - GFF2133 0.68 +0.9
818,728 - GFF2133 0.68 -0.6
818,753 + GFF2133 0.71 +0.3
818,839 + GFF2133 0.80 -0.5
818,840 - GFF2133 0.80 -0.2
818,889 + GFF2133 0.86 -0.9
818,889 + GFF2133 0.86 -1.8
818,889 + GFF2133 0.86 -0.1
818,889 + GFF2133 0.86 -0.3
818,910 + GFF2133 0.88 +2.5
818,946 + -0.2
818,947 - +0.1
818,989 + -0.7
819,124 + +0.6
819,125 - -0.2
819,178 + +0.5
819,178 + +0.6
819,178 + -0.7
819,178 + +1.1
819,178 + -1.7
819,178 + +0.5
819,178 + -0.8
819,179 - +0.8
819,179 - -1.0
819,179 - -0.7
819,179 - -1.0
819,179 - -0.1
819,216 + -0.1
819,235 + -0.3
819,263 + GFF2134 0.12 -0.1
819,263 + GFF2134 0.12 -0.2
819,264 - GFF2134 0.12 -0.7
819,302 - GFF2134 0.15 +0.3
819,481 - GFF2134 0.30 +0.3
819,823 - GFF2134 0.58 +1.2
819,823 - GFF2134 0.58 +0.9
819,933 - GFF2134 0.67 -0.1
819,952 + GFF2134 0.68 -0.1
819,953 - GFF2134 0.68 +0.1
819,953 - GFF2134 0.68 -1.2
819,953 - GFF2134 0.68 -0.8
819,953 - GFF2134 0.68 -0.1

Or see this region's nucleotide sequence