Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2014 and GFF2015 are separated by 18 nucleotides GFF2015 and GFF2016 are separated by 87 nucleotides GFF2016 and GFF2017 are separated by 41 nucleotides GFF2017 and GFF2018 are separated by 292 nucleotides
GFF2014 - Nitrobenzene nitroreductase, at 687,542 to 688,249
GFF2014
GFF2015 - hypothetical protein, at 688,268 to 688,774
GFF2015
GFF2016 - HTH-type transcriptional regulator CdhR, at 688,862 to 689,797
GFF2016
GFF2017 - hypothetical protein, at 689,839 to 690,324
GFF2017
GFF2018 - Methylamine utilization protein MauG, at 690,617 to 691,771
GFF2018
Position (kb) 688
689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 687.870 kb on - strand, within GFF2014 at 687.907 kb on + strand, within GFF2014 at 687.908 kb on - strand, within GFF2014 at 687.908 kb on - strand, within GFF2014 at 688.088 kb on + strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.130 kb on + strand, within GFF2014 at 688.734 kb on + strand at 688.735 kb on - strand at 688.735 kb on - strand at 688.801 kb on + strand at 688.850 kb on + strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 689.059 kb on + strand, within GFF2016 at 689.252 kb on + strand, within GFF2016 at 689.252 kb on + strand, within GFF2016 at 689.295 kb on + strand, within GFF2016 at 689.734 kb on - strand at 689.907 kb on + strand, within GFF2017 at 689.925 kb on + strand, within GFF2017 at 689.926 kb on - strand, within GFF2017 at 690.238 kb on - strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.377 kb on + strand at 690.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 687,870 - GFF2014 0.46 +0.0 687,907 + GFF2014 0.52 -0.0 687,908 - GFF2014 0.52 +1.4 687,908 - GFF2014 0.52 -0.0 688,088 + GFF2014 0.77 +0.2 688,089 - GFF2014 0.77 +1.2 688,089 - GFF2014 0.77 -1.0 688,089 - GFF2014 0.77 -0.1 688,130 + GFF2014 0.83 +0.1 688,734 + +0.0 688,735 - -0.7 688,735 - -1.4 688,801 + -0.6 688,850 + -0.4 688,884 - -0.2 688,884 - -1.8 688,884 - -0.3 688,962 + GFF2016 0.11 +0.1 688,962 + GFF2016 0.11 +1.2 688,962 + GFF2016 0.11 -0.3 688,962 + GFF2016 0.11 +0.3 688,962 + GFF2016 0.11 +0.5 688,962 + GFF2016 0.11 +0.5 688,962 + GFF2016 0.11 -0.5 688,963 - GFF2016 0.11 -0.1 688,963 - GFF2016 0.11 -0.3 688,963 - GFF2016 0.11 +1.1 689,059 + GFF2016 0.21 -0.5 689,252 + GFF2016 0.42 -0.4 689,252 + GFF2016 0.42 -0.5 689,295 + GFF2016 0.46 -0.1 689,734 - +0.6 689,907 + GFF2017 0.14 +0.8 689,925 + GFF2017 0.18 +0.0 689,926 - GFF2017 0.18 -0.5 690,238 - GFF2017 0.82 +0.1 690,239 + GFF2017 0.82 +0.4 690,239 + GFF2017 0.82 -0.1 690,240 - GFF2017 0.83 -1.7 690,240 - GFF2017 0.83 -1.2 690,240 - GFF2017 0.83 -1.0 690,240 - GFF2017 0.83 -0.6 690,240 - GFF2017 0.83 +0.8 690,377 + -1.1 690,378 - +0.4
Or see this region's nucleotide sequence