Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF200 and GFF201 are separated by 211 nucleotides GFF201 and GFF202 are separated by 155 nucleotides GFF202 and GFF203 are separated by 78 nucleotides
GFF200 - Type I secretion system ATP-binding protein PrsD, at 209,872 to 211,704
GFF200
GFF201 - hypothetical protein, at 211,916 to 213,325
GFF201
GFF202 - hypothetical protein, at 213,481 to 214,005
GFF202
GFF203 - Serine acetyltransferase, at 214,084 to 214,968
GFF203
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 211.217 kb on + strand, within GFF200 at 211.218 kb on - strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.264 kb on + strand, within GFF200 at 211.264 kb on + strand, within GFF200 at 211.265 kb on - strand, within GFF200 at 211.301 kb on - strand, within GFF200 at 211.475 kb on + strand, within GFF200 at 211.495 kb on - strand, within GFF200 at 211.544 kb on + strand at 211.544 kb on + strand at 211.544 kb on + strand at 211.560 kb on - strand at 211.560 kb on - strand at 211.697 kb on - strand at 211.773 kb on + strand at 211.773 kb on + strand at 211.773 kb on + strand at 211.872 kb on + strand at 212.132 kb on + strand, within GFF201 at 212.132 kb on + strand, within GFF201 at 212.133 kb on - strand, within GFF201 at 212.432 kb on + strand, within GFF201 at 212.433 kb on - strand, within GFF201 at 212.837 kb on - strand, within GFF201 at 212.883 kb on - strand, within GFF201 at 212.883 kb on - strand, within GFF201 at 213.184 kb on + strand, within GFF201 at 213.184 kb on + strand, within GFF201 at 213.185 kb on - strand at 213.185 kb on - strand at 213.452 kb on - strand at 213.452 kb on - strand at 213.467 kb on - strand at 213.545 kb on - strand, within GFF202 at 214.047 kb on + strand at 214.047 kb on + strand at 214.047 kb on + strand at 214.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 211,217 + GFF200 0.73 -0.7 211,218 - GFF200 0.73 -0.8 211,247 + GFF200 0.75 -0.2 211,247 + GFF200 0.75 +0.5 211,247 + GFF200 0.75 +0.9 211,247 + GFF200 0.75 +0.6 211,248 - GFF200 0.75 -0.1 211,248 - GFF200 0.75 -0.4 211,248 - GFF200 0.75 -0.6 211,264 + GFF200 0.76 +0.0 211,264 + GFF200 0.76 -2.3 211,265 - GFF200 0.76 +0.3 211,301 - GFF200 0.78 -0.6 211,475 + GFF200 0.87 +0.4 211,495 - GFF200 0.89 -0.3 211,544 + +1.5 211,544 + +0.9 211,544 + -0.5 211,560 - +0.9 211,560 - +1.2 211,697 - +0.5 211,773 + -0.7 211,773 + +0.9 211,773 + +0.6 211,872 + +0.1 212,132 + GFF201 0.15 +0.1 212,132 + GFF201 0.15 +0.2 212,133 - GFF201 0.15 +0.1 212,432 + GFF201 0.37 +0.6 212,433 - GFF201 0.37 -0.1 212,837 - GFF201 0.65 -1.4 212,883 - GFF201 0.69 -0.1 212,883 - GFF201 0.69 +0.1 213,184 + GFF201 0.90 +0.1 213,184 + GFF201 0.90 -0.0 213,185 - +0.4 213,185 - -0.2 213,452 - -1.3 213,452 - -0.4 213,467 - -0.2 213,545 - GFF202 0.12 -0.0 214,047 + +0.2 214,047 + +1.7 214,047 + -0.5 214,047 + -1.9
Or see this region's nucleotide sequence