Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2008 and GFF2009 are separated by 48 nucleotides GFF2009 and GFF2010 overlap by 1 nucleotides
GFF2008 - Acetolactate synthase large subunit IlvB1, at 677,374 to 679,092
GFF2008
GFF2009 - Glutarate-semialdehyde dehydrogenase, at 679,141 to 680,604
GFF2009
GFF2010 - 5-(hydroxymethyl)furfural oxidase, at 680,604 to 682,319
GFF2010
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1 at 678.241 kb on + strand, within GFF2008 at 678.241 kb on + strand, within GFF2008 at 678.242 kb on - strand, within GFF2008 at 678.242 kb on - strand, within GFF2008 at 678.320 kb on - strand, within GFF2008 at 678.320 kb on - strand, within GFF2008 at 678.320 kb on - strand, within GFF2008 at 678.455 kb on - strand, within GFF2008 at 678.601 kb on + strand, within GFF2008 at 678.766 kb on + strand, within GFF2008 at 678.767 kb on - strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.808 kb on + strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.809 kb on - strand, within GFF2008 at 678.905 kb on - strand, within GFF2008 at 678.905 kb on - strand, within GFF2008 at 679.111 kb on - strand at 679.179 kb on - strand at 679.490 kb on - strand, within GFF2009 at 679.490 kb on - strand, within GFF2009 at 679.492 kb on + strand, within GFF2009 at 679.492 kb on + strand, within GFF2009 at 679.493 kb on - strand, within GFF2009 at 679.493 kb on - strand, within GFF2009 at 679.510 kb on + strand, within GFF2009 at 679.510 kb on + strand, within GFF2009 at 679.857 kb on + strand, within GFF2009 at 679.858 kb on - strand, within GFF2009 at 679.858 kb on - strand, within GFF2009 at 680.042 kb on - strand, within GFF2009 at 680.380 kb on + strand, within GFF2009 at 680.381 kb on - strand, within GFF2009 at 680.381 kb on - strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.510 kb on - strand at 680.542 kb on + strand at 680.581 kb on + strand at 680.581 kb on + strand at 680.581 kb on + strand at 680.582 kb on - strand at 680.654 kb on - strand at 680.784 kb on + strand, within GFF2010 at 680.880 kb on + strand, within GFF2010 at 681.012 kb on + strand, within GFF2010 at 681.089 kb on + strand, within GFF2010 at 681.090 kb on - strand, within GFF2010 at 681.196 kb on + strand, within GFF2010 at 681.196 kb on + strand, within GFF2010 at 681.197 kb on - strand, within GFF2010 at 681.253 kb on - strand, within GFF2010 at 681.253 kb on - strand, within GFF2010 at 681.556 kb on - strand, within GFF2010 at 681.572 kb on - strand, within GFF2010 at 681.588 kb on + strand, within GFF2010 at 681.589 kb on - strand, within GFF2010 at 681.589 kb on - strand, within GFF2010
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 678,241 + GFF2008 0.50 -0.1 678,241 + GFF2008 0.50 +0.7 678,242 - GFF2008 0.50 -0.4 678,242 - GFF2008 0.50 +0.5 678,320 - GFF2008 0.55 +0.0 678,320 - GFF2008 0.55 +0.9 678,320 - GFF2008 0.55 -0.1 678,455 - GFF2008 0.63 -0.4 678,601 + GFF2008 0.71 +0.9 678,766 + GFF2008 0.81 +1.2 678,767 - GFF2008 0.81 +0.6 678,808 + GFF2008 0.83 -1.2 678,808 + GFF2008 0.83 -0.4 678,808 + GFF2008 0.83 -0.1 678,808 + GFF2008 0.83 -0.5 678,808 + GFF2008 0.83 +0.0 678,808 + GFF2008 0.83 -0.3 678,809 - GFF2008 0.83 -0.1 678,809 - GFF2008 0.83 +0.6 678,809 - GFF2008 0.83 -0.1 678,809 - GFF2008 0.83 +0.6 678,809 - GFF2008 0.83 -0.6 678,809 - GFF2008 0.83 +0.4 678,809 - GFF2008 0.83 +0.9 678,809 - GFF2008 0.83 +0.6 678,809 - GFF2008 0.83 +0.4 678,905 - GFF2008 0.89 -0.5 678,905 - GFF2008 0.89 -0.3 679,111 - -0.2 679,179 - +0.3 679,490 - GFF2009 0.24 -0.0 679,490 - GFF2009 0.24 +0.6 679,492 + GFF2009 0.24 -0.1 679,492 + GFF2009 0.24 +0.1 679,493 - GFF2009 0.24 -1.2 679,493 - GFF2009 0.24 -0.4 679,510 + GFF2009 0.25 +0.6 679,510 + GFF2009 0.25 +1.1 679,857 + GFF2009 0.49 +0.6 679,858 - GFF2009 0.49 -0.0 679,858 - GFF2009 0.49 -0.6 680,042 - GFF2009 0.62 +0.1 680,380 + GFF2009 0.85 +0.2 680,381 - GFF2009 0.85 +0.5 680,381 - GFF2009 0.85 +0.9 680,399 + GFF2009 0.86 -0.1 680,399 + GFF2009 0.86 +0.6 680,399 + GFF2009 0.86 +0.3 680,510 - +0.4 680,542 + -0.9 680,581 + -0.4 680,581 + -0.7 680,581 + -0.1 680,582 - +0.7 680,654 - -0.3 680,784 + GFF2010 0.10 -0.6 680,880 + GFF2010 0.16 -0.9 681,012 + GFF2010 0.24 +0.1 681,089 + GFF2010 0.28 +0.4 681,090 - GFF2010 0.28 +0.1 681,196 + GFF2010 0.34 -0.6 681,196 + GFF2010 0.34 +0.5 681,197 - GFF2010 0.35 -0.6 681,253 - GFF2010 0.38 +0.3 681,253 - GFF2010 0.38 -0.1 681,556 - GFF2010 0.55 +1.2 681,572 - GFF2010 0.56 +0.8 681,588 + GFF2010 0.57 -0.4 681,589 - GFF2010 0.57 -0.3 681,589 - GFF2010 0.57 +0.2
Or see this region's nucleotide sequence