Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1989 and GFF1990 are separated by 12 nucleotides GFF1990 and GFF1991 overlap by 4 nucleotides
GFF1989 - Adaptive-response sensory-kinase SasA, at 653,789 to 656,563
GFF1989
GFF1990 - Sensor histidine kinase RcsC, at 656,576 to 657,019
GFF1990
GFF1991 - 3'-5' exonuclease DinG, at 657,016 to 659,190
GFF1991
Position (kb) 656
657
658 Strain fitness (log2 ratio) -1
0
1 at 655.736 kb on + strand, within GFF1989 at 655.736 kb on + strand, within GFF1989 at 655.736 kb on + strand, within GFF1989 at 655.737 kb on - strand, within GFF1989 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.931 kb on - strand, within GFF1990 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.245 kb on - strand, within GFF1991 at 657.245 kb on - strand, within GFF1991 at 657.843 kb on + strand, within GFF1991 at 657.844 kb on - strand, within GFF1991 at 657.844 kb on - strand, within GFF1991 at 657.853 kb on + strand, within GFF1991 at 657.854 kb on - strand, within GFF1991 at 657.952 kb on + strand, within GFF1991 at 657.953 kb on - strand, within GFF1991 at 657.953 kb on - strand, within GFF1991 at 657.953 kb on - strand, within GFF1991
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 655,736 + GFF1989 0.70 +0.4 655,736 + GFF1989 0.70 -1.1 655,736 + GFF1989 0.70 +0.9 655,737 - GFF1989 0.70 +0.5 656,930 + GFF1990 0.80 +0.6 656,930 + GFF1990 0.80 +0.1 656,930 + GFF1990 0.80 -0.9 656,930 + GFF1990 0.80 -0.4 656,930 + GFF1990 0.80 +0.1 656,931 - GFF1990 0.80 +0.2 657,244 + GFF1991 0.10 -0.1 657,244 + GFF1991 0.10 +0.8 657,244 + GFF1991 0.10 +0.1 657,244 + GFF1991 0.10 +0.5 657,244 + GFF1991 0.10 -0.3 657,245 - GFF1991 0.11 -0.7 657,245 - GFF1991 0.11 +0.3 657,843 + GFF1991 0.38 -0.4 657,844 - GFF1991 0.38 +0.3 657,844 - GFF1991 0.38 -1.7 657,853 + GFF1991 0.38 +1.3 657,854 - GFF1991 0.39 +0.6 657,952 + GFF1991 0.43 +0.9 657,953 - GFF1991 0.43 +0.4 657,953 - GFF1991 0.43 -1.1 657,953 - GFF1991 0.43 -0.6
Or see this region's nucleotide sequence