Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1853 and GFF1854 are separated by 28 nucleotides GFF1854 and GFF1855 are separated by 281 nucleotides
GFF1853 - hypothetical protein, at 514,448 to 515,164
GFF1853
GFF1854 - Gamma-glutamylputrescine oxidoreductase, at 515,193 to 516,497
GFF1854
GFF1855 - hypothetical protein, at 516,779 to 517,360
GFF1855
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1 at 514.373 kb on + strand at 514.373 kb on + strand at 514.374 kb on - strand at 514.577 kb on - strand, within GFF1853 at 514.715 kb on + strand, within GFF1853 at 514.913 kb on + strand, within GFF1853 at 514.914 kb on - strand, within GFF1853 at 514.914 kb on - strand, within GFF1853 at 514.994 kb on + strand, within GFF1853 at 515.162 kb on + strand at 515.246 kb on - strand at 515.246 kb on - strand at 515.643 kb on + strand, within GFF1854 at 515.643 kb on + strand, within GFF1854 at 515.644 kb on - strand, within GFF1854 at 515.644 kb on - strand, within GFF1854 at 515.764 kb on + strand, within GFF1854 at 515.955 kb on + strand, within GFF1854 at 515.955 kb on + strand, within GFF1854 at 516.367 kb on + strand at 516.637 kb on + strand at 516.637 kb on + strand at 516.638 kb on - strand at 516.741 kb on - strand at 516.798 kb on - strand at 516.854 kb on + strand, within GFF1855 at 516.854 kb on + strand, within GFF1855 at 516.855 kb on - strand, within GFF1855 at 517.035 kb on - strand, within GFF1855 at 517.035 kb on - strand, within GFF1855 at 517.274 kb on + strand, within GFF1855 at 517.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 514,373 + -0.9 514,373 + -0.5 514,374 - +0.0 514,577 - GFF1853 0.18 +1.5 514,715 + GFF1853 0.37 -1.9 514,913 + GFF1853 0.65 -0.4 514,914 - GFF1853 0.65 -1.3 514,914 - GFF1853 0.65 -0.8 514,994 + GFF1853 0.76 +0.8 515,162 + +0.3 515,246 - -0.4 515,246 - -0.3 515,643 + GFF1854 0.34 -0.7 515,643 + GFF1854 0.34 -0.9 515,644 - GFF1854 0.35 -0.8 515,644 - GFF1854 0.35 -0.0 515,764 + GFF1854 0.44 -0.1 515,955 + GFF1854 0.58 +0.8 515,955 + GFF1854 0.58 +0.0 516,367 + +0.5 516,637 + +0.9 516,637 + -0.6 516,638 - +0.4 516,741 - +1.3 516,798 - -1.3 516,854 + GFF1855 0.13 -0.4 516,854 + GFF1855 0.13 +0.3 516,855 - GFF1855 0.13 -0.4 517,035 - GFF1855 0.44 -0.3 517,035 - GFF1855 0.44 -0.5 517,274 + GFF1855 0.85 +0.3 517,490 + -0.1
Or see this region's nucleotide sequence