Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1851 and GFF1852 are separated by 64 nucleotides GFF1852 and GFF1853 are separated by 457 nucleotides
GFF1851 - hypothetical protein, at 511,491 to 512,501
GFF1851
GFF1852 - 3-isopropylmalate dehydratase large subunit, at 512,566 to 513,990
GFF1852
GFF1853 - hypothetical protein, at 514,448 to 515,164
GFF1853
Position (kb) 512
513
514 Strain fitness (log2 ratio) -2
-1
0
1 at 511.920 kb on + strand, within GFF1851 at 511.921 kb on - strand, within GFF1851 at 511.973 kb on + strand, within GFF1851 at 512.044 kb on - strand, within GFF1851 at 512.044 kb on - strand, within GFF1851 at 512.373 kb on + strand, within GFF1851 at 512.374 kb on - strand, within GFF1851 at 512.413 kb on - strand at 512.463 kb on + strand at 512.464 kb on - strand at 512.484 kb on + strand at 512.997 kb on + strand, within GFF1852 at 512.997 kb on + strand, within GFF1852 at 512.998 kb on - strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 513.248 kb on + strand, within GFF1852 at 513.365 kb on + strand, within GFF1852 at 513.366 kb on - strand, within GFF1852 at 513.680 kb on + strand, within GFF1852 at 513.895 kb on - strand at 513.897 kb on - strand at 513.897 kb on - strand at 513.897 kb on - strand at 513.897 kb on - strand at 513.897 kb on - strand at 513.956 kb on + strand at 514.060 kb on - strand at 514.074 kb on - strand at 514.074 kb on - strand at 514.373 kb on + strand at 514.373 kb on + strand at 514.374 kb on - strand at 514.577 kb on - strand, within GFF1853 at 514.715 kb on + strand, within GFF1853 at 514.913 kb on + strand, within GFF1853 at 514.914 kb on - strand, within GFF1853 at 514.914 kb on - strand, within GFF1853
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 511,920 + GFF1851 0.42 +0.1 511,921 - GFF1851 0.43 +0.1 511,973 + GFF1851 0.48 -1.7 512,044 - GFF1851 0.55 +0.5 512,044 - GFF1851 0.55 -0.9 512,373 + GFF1851 0.87 +0.9 512,374 - GFF1851 0.87 +0.5 512,413 - +1.4 512,463 + -0.1 512,464 - -0.3 512,484 + -1.2 512,997 + GFF1852 0.30 -2.3 512,997 + GFF1852 0.30 -2.2 512,998 - GFF1852 0.30 -2.0 512,999 + GFF1852 0.30 -1.7 512,999 + GFF1852 0.30 -2.4 512,999 + GFF1852 0.30 -2.7 513,248 + GFF1852 0.48 -1.1 513,365 + GFF1852 0.56 -1.6 513,366 - GFF1852 0.56 -2.0 513,680 + GFF1852 0.78 -0.4 513,895 - -2.0 513,897 - -1.4 513,897 - -1.6 513,897 - -2.3 513,897 - -1.9 513,897 - -1.4 513,956 + -2.7 514,060 - -0.3 514,074 - -0.4 514,074 - +0.1 514,373 + -0.9 514,373 + -0.5 514,374 - +0.0 514,577 - GFF1853 0.18 +1.5 514,715 + GFF1853 0.37 -1.9 514,913 + GFF1853 0.65 -0.4 514,914 - GFF1853 0.65 -1.3 514,914 - GFF1853 0.65 -0.8
Or see this region's nucleotide sequence