Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1849 and GFF1850 are separated by 7 nucleotides GFF1850 and GFF1851 are separated by 72 nucleotides GFF1851 and GFF1852 are separated by 64 nucleotides
GFF1849 - putative nicotinate-nucleotide pyrophosphorylase [carboxylating], at 509,768 to 510,622
GFF1849
GFF1850 - hypothetical protein, at 510,630 to 511,418
GFF1850
GFF1851 - hypothetical protein, at 511,491 to 512,501
GFF1851
GFF1852 - 3-isopropylmalate dehydratase large subunit, at 512,566 to 513,990
GFF1852
Position (kb) 511
512
513 Strain fitness (log2 ratio) -2
-1
0
1 at 511.147 kb on + strand, within GFF1850 at 511.147 kb on + strand, within GFF1850 at 511.148 kb on - strand, within GFF1850 at 511.264 kb on + strand, within GFF1850 at 511.312 kb on + strand, within GFF1850 at 511.313 kb on - strand, within GFF1850 at 511.313 kb on - strand, within GFF1850 at 511.313 kb on - strand, within GFF1850 at 511.313 kb on - strand, within GFF1850 at 511.313 kb on - strand, within GFF1850 at 511.396 kb on + strand at 511.422 kb on + strand at 511.422 kb on + strand at 511.423 kb on - strand at 511.423 kb on - strand at 511.423 kb on - strand at 511.920 kb on + strand, within GFF1851 at 511.921 kb on - strand, within GFF1851 at 511.973 kb on + strand, within GFF1851 at 512.044 kb on - strand, within GFF1851 at 512.044 kb on - strand, within GFF1851 at 512.373 kb on + strand, within GFF1851 at 512.374 kb on - strand, within GFF1851 at 512.413 kb on - strand at 512.463 kb on + strand at 512.464 kb on - strand at 512.484 kb on + strand at 512.997 kb on + strand, within GFF1852 at 512.997 kb on + strand, within GFF1852 at 512.998 kb on - strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 512.999 kb on + strand, within GFF1852 at 513.248 kb on + strand, within GFF1852 at 513.365 kb on + strand, within GFF1852 at 513.366 kb on - strand, within GFF1852
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 511,147 + GFF1850 0.66 -0.3 511,147 + GFF1850 0.66 -0.3 511,148 - GFF1850 0.66 -0.5 511,264 + GFF1850 0.80 +0.0 511,312 + GFF1850 0.86 +0.4 511,313 - GFF1850 0.87 -0.6 511,313 - GFF1850 0.87 -0.6 511,313 - GFF1850 0.87 -0.8 511,313 - GFF1850 0.87 +0.8 511,313 - GFF1850 0.87 +0.3 511,396 + -0.3 511,422 + +0.6 511,422 + -0.8 511,423 - -0.2 511,423 - -0.2 511,423 - -0.2 511,920 + GFF1851 0.42 +0.1 511,921 - GFF1851 0.43 +0.1 511,973 + GFF1851 0.48 -1.7 512,044 - GFF1851 0.55 +0.5 512,044 - GFF1851 0.55 -0.9 512,373 + GFF1851 0.87 +0.9 512,374 - GFF1851 0.87 +0.5 512,413 - +1.4 512,463 + -0.1 512,464 - -0.3 512,484 + -1.2 512,997 + GFF1852 0.30 -2.3 512,997 + GFF1852 0.30 -2.2 512,998 - GFF1852 0.30 -2.0 512,999 + GFF1852 0.30 -1.7 512,999 + GFF1852 0.30 -2.4 512,999 + GFF1852 0.30 -2.7 513,248 + GFF1852 0.48 -1.1 513,365 + GFF1852 0.56 -1.6 513,366 - GFF1852 0.56 -2.0
Or see this region's nucleotide sequence