Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1846 and GFF1847 are separated by 58 nucleotides GFF1847 and GFF1848 overlap by 4 nucleotides
GFF1846 - hypothetical protein, at 506,200 to 507,129
GFF1846
GFF1847 - Quinolinate synthase A, at 507,188 to 508,228
GFF1847
GFF1848 - L-aspartate oxidase, at 508,225 to 509,751
GFF1848
Position (kb) 507
508
509 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 507.154 kb on + strand at 507.166 kb on - strand at 507.182 kb on + strand at 507.195 kb on + strand at 507.196 kb on - strand at 507.288 kb on - strand at 507.288 kb on - strand at 507.401 kb on + strand, within GFF1847 at 507.401 kb on + strand, within GFF1847 at 507.512 kb on + strand, within GFF1847 at 507.513 kb on - strand, within GFF1847 at 507.662 kb on + strand, within GFF1847 at 507.663 kb on - strand, within GFF1847 at 507.779 kb on + strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 508.224 kb on + strand at 508.224 kb on + strand at 508.225 kb on - strand at 508.811 kb on - strand, within GFF1848 at 509.224 kb on + strand, within GFF1848 at 509.225 kb on - strand, within GFF1848
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 507,154 + +0.7 507,166 - -0.6 507,182 + -1.0 507,195 + -0.2 507,196 - -4.1 507,288 - -1.3 507,288 - -1.0 507,401 + GFF1847 0.20 -3.3 507,401 + GFF1847 0.20 -3.1 507,512 + GFF1847 0.31 -0.4 507,513 - GFF1847 0.31 -0.9 507,662 + GFF1847 0.46 -1.8 507,663 - GFF1847 0.46 -2.3 507,779 + GFF1847 0.57 -2.6 507,780 - GFF1847 0.57 -1.7 507,780 - GFF1847 0.57 -1.7 507,780 - GFF1847 0.57 -3.1 507,986 + GFF1847 0.77 -0.9 507,986 + GFF1847 0.77 -3.0 507,986 + GFF1847 0.77 -2.7 507,987 - GFF1847 0.77 -1.9 507,987 - GFF1847 0.77 -3.8 507,987 - GFF1847 0.77 -1.7 508,224 + -0.4 508,224 + -1.1 508,225 - -1.9 508,811 - GFF1848 0.38 -2.6 509,224 + GFF1848 0.65 -2.0 509,225 - GFF1848 0.65 -1.7
Or see this region's nucleotide sequence