Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1745 and GFF1746 are separated by 193 nucleotides GFF1746 and GFF1747 are separated by 90 nucleotides GFF1747 and GFF1748 are separated by 127 nucleotides
GFF1745 - Thiosulfate-binding protein, at 393,862 to 394,884
GFF1745
GFF1746 - Aldo-keto reductase IolS, at 395,078 to 396,064
GFF1746
GFF1747 - hypothetical protein, at 396,155 to 396,814
GFF1747
GFF1748 - Nucleoside diphosphate kinase, at 396,942 to 397,364
GFF1748
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.190 kb on + strand, within GFF1745 at 394.295 kb on - strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.518 kb on - strand, within GFF1745 at 394.521 kb on - strand, within GFF1745 at 394.569 kb on - strand, within GFF1745 at 394.769 kb on + strand, within GFF1745 at 394.769 kb on + strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 395.015 kb on + strand at 395.016 kb on - strand at 395.016 kb on - strand at 395.016 kb on - strand at 395.536 kb on - strand, within GFF1746 at 395.538 kb on + strand, within GFF1746 at 395.700 kb on + strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.703 kb on + strand, within GFF1746 at 395.716 kb on + strand, within GFF1746 at 395.717 kb on - strand, within GFF1746 at 395.763 kb on + strand, within GFF1746 at 395.763 kb on + strand, within GFF1746 at 395.898 kb on + strand, within GFF1746 at 395.898 kb on + strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.949 kb on - strand, within GFF1746 at 395.967 kb on + strand at 395.998 kb on + strand at 395.998 kb on + strand at 395.999 kb on - strand at 395.999 kb on - strand at 395.999 kb on - strand at 396.076 kb on + strand at 396.076 kb on + strand at 396.076 kb on + strand at 396.299 kb on + strand, within GFF1747 at 396.486 kb on - strand, within GFF1747 at 396.588 kb on - strand, within GFF1747 at 396.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 394,190 + GFF1745 0.32 -1.1 394,295 - GFF1745 0.42 -0.5 394,517 + GFF1745 0.64 +0.8 394,517 + GFF1745 0.64 -0.3 394,517 + GFF1745 0.64 -0.5 394,517 + GFF1745 0.64 -2.4 394,518 - GFF1745 0.64 +0.0 394,521 - GFF1745 0.64 -0.0 394,569 - GFF1745 0.69 -0.2 394,769 + GFF1745 0.89 +0.1 394,769 + GFF1745 0.89 +1.9 394,770 - GFF1745 0.89 +0.7 394,770 - GFF1745 0.89 -0.1 394,770 - GFF1745 0.89 -0.4 395,015 + +1.5 395,016 - +0.2 395,016 - -0.4 395,016 - +0.5 395,536 - GFF1746 0.46 +1.1 395,538 + GFF1746 0.47 +0.1 395,700 + GFF1746 0.63 -0.0 395,701 - GFF1746 0.63 +0.9 395,701 - GFF1746 0.63 -0.7 395,701 - GFF1746 0.63 +0.2 395,703 + GFF1746 0.63 -0.9 395,716 + GFF1746 0.65 -0.8 395,717 - GFF1746 0.65 -0.0 395,763 + GFF1746 0.69 -0.1 395,763 + GFF1746 0.69 +0.2 395,898 + GFF1746 0.83 -1.4 395,898 + GFF1746 0.83 +0.2 395,899 - GFF1746 0.83 +0.4 395,899 - GFF1746 0.83 -0.5 395,899 - GFF1746 0.83 +1.8 395,949 - GFF1746 0.88 -1.0 395,967 + -1.0 395,998 + +0.6 395,998 + -0.3 395,999 - -1.1 395,999 - -0.7 395,999 - +1.2 396,076 + +0.6 396,076 + -0.4 396,076 + -0.8 396,299 + GFF1747 0.22 -0.8 396,486 - GFF1747 0.50 -0.6 396,588 - GFF1747 0.66 -1.3 396,837 - -0.6
Or see this region's nucleotide sequence