Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1729 and GFF1730 are separated by 145 nucleotides GFF1730 and GFF1731 are separated by 5 nucleotides GFF1731 and GFF1732 overlap by 4 nucleotides GFF1732 and GFF1733 are separated by 61 nucleotides
GFF1729 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 377,759 to 378,526
GFF1729
GFF1730 - Molybdopterin synthase catalytic subunit, at 378,672 to 379,142
GFF1730
GFF1731 - Molybdopterin synthase sulfur carrier subunit, at 379,148 to 379,399
GFF1731
GFF1732 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 379,396 to 380,076
GFF1732
GFF1733 - UvrABC system protein C, at 380,138 to 382,498
GFF1733
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 377.698 kb on + strand at 377.771 kb on + strand at 377.772 kb on - strand at 377.814 kb on + strand at 377.815 kb on - strand at 377.955 kb on + strand, within GFF1729 at 378.051 kb on + strand, within GFF1729 at 378.052 kb on - strand, within GFF1729 at 378.456 kb on + strand at 378.457 kb on - strand at 378.464 kb on + strand at 378.645 kb on + strand at 378.646 kb on - strand at 378.976 kb on + strand, within GFF1730 at 379.266 kb on + strand, within GFF1731 at 380.052 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.096 kb on - strand at 380.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 377,698 + +0.3 377,771 + +0.1 377,772 - -0.4 377,814 + +0.5 377,815 - +0.1 377,955 + GFF1729 0.26 -0.8 378,051 + GFF1729 0.38 +1.3 378,052 - GFF1729 0.38 -1.3 378,456 + +0.2 378,457 - -0.4 378,464 + -1.3 378,645 + -0.1 378,646 - +0.6 378,976 + GFF1730 0.65 -1.8 379,266 + GFF1731 0.47 -2.1 380,052 - -0.7 380,096 - +0.3 380,096 - +0.6 380,096 - -0.5 380,100 - +0.1
Or see this region's nucleotide sequence