Strain Fitness in Xanthobacter sp. DMC5 around GFF1661

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1660 and GFF1661 are separated by 3 nucleotidesGFF1661 and GFF1662 are separated by 548 nucleotides GFF1660 - Peptide chain release factor RF1, at 314,753 to 315,835 GFF1660 GFF1661 - Release factor glutamine methyltransferase, at 315,839 to 316,777 GFF1661 GFF1662 - hypothetical protein, at 317,326 to 318,579 GFF1662 Position (kb) 315 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1at 317.261 kb on + strandat 317.325 kb on + strandat 317.659 kb on + strand, within GFF1662at 317.660 kb on - strand, within GFF1662at 317.680 kb on + strand, within GFF1662at 317.680 kb on + strand, within GFF1662at 317.681 kb on - strand, within GFF1662at 317.701 kb on + strand, within GFF1662at 317.702 kb on - strand, within GFF1662

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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317,261 + -0.4
317,325 + -2.3
317,659 + GFF1662 0.27 +0.1
317,660 - GFF1662 0.27 -0.4
317,680 + GFF1662 0.28 -1.9
317,680 + GFF1662 0.28 -3.1
317,681 - GFF1662 0.28 -0.9
317,701 + GFF1662 0.30 -1.9
317,702 - GFF1662 0.30 +0.6

Or see this region's nucleotide sequence