Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1638 and GFF1639 are separated by 133 nucleotides GFF1639 and GFF1640 are separated by 106 nucleotides GFF1640 and GFF1641 are separated by 14 nucleotides GFF1641 and GFF1642 are separated by 259 nucleotides
GFF1638 - hypothetical protein, at 288,769 to 289,272
GFF1638
GFF1639 - Ferredoxin-2, at 289,406 to 289,741
GFF1639
GFF1640 - Heat shock protein 15, at 289,848 to 290,123
GFF1640
GFF1641 - hypothetical protein, at 290,138 to 293,476
GFF1641
GFF1642 - hypothetical protein, at 293,736 to 294,530
GFF1642
Position (kb) 290
291
292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 289.889 kb on + strand, within GFF1640 at 289.889 kb on + strand, within GFF1640 at 289.890 kb on - strand, within GFF1640 at 289.890 kb on - strand, within GFF1640 at 290.629 kb on - strand, within GFF1641 at 291.088 kb on + strand, within GFF1641 at 291.237 kb on + strand, within GFF1641 at 291.348 kb on + strand, within GFF1641 at 291.399 kb on + strand, within GFF1641 at 291.400 kb on - strand, within GFF1641 at 291.944 kb on - strand, within GFF1641 at 292.040 kb on + strand, within GFF1641 at 292.140 kb on + strand, within GFF1641 at 292.259 kb on + strand, within GFF1641 at 292.259 kb on + strand, within GFF1641 at 292.259 kb on + strand, within GFF1641 at 292.259 kb on + strand, within GFF1641 at 292.260 kb on - strand, within GFF1641 at 292.260 kb on - strand, within GFF1641 at 292.260 kb on - strand, within GFF1641 at 292.260 kb on - strand, within GFF1641 at 292.318 kb on - strand, within GFF1641 at 292.686 kb on + strand, within GFF1641 at 292.779 kb on + strand, within GFF1641 at 292.779 kb on + strand, within GFF1641 at 292.780 kb on - strand, within GFF1641 at 292.896 kb on + strand, within GFF1641 at 292.897 kb on - strand, within GFF1641 at 293.070 kb on + strand, within GFF1641 at 293.395 kb on + strand at 293.497 kb on + strand at 293.498 kb on - strand at 293.515 kb on + strand at 293.515 kb on + strand at 293.520 kb on + strand at 293.693 kb on - strand at 293.880 kb on + strand, within GFF1642 at 293.880 kb on + strand, within GFF1642 at 293.881 kb on - strand, within GFF1642 at 294.025 kb on - strand, within GFF1642 at 294.094 kb on + strand, within GFF1642 at 294.094 kb on + strand, within GFF1642 at 294.094 kb on + strand, within GFF1642 at 294.095 kb on - strand, within GFF1642 at 294.306 kb on + strand, within GFF1642 at 294.307 kb on - strand, within GFF1642 at 294.307 kb on - strand, within GFF1642
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 289,889 + GFF1640 0.15 +0.5 289,889 + GFF1640 0.15 -0.8 289,890 - GFF1640 0.15 -0.5 289,890 - GFF1640 0.15 +1.0 290,629 - GFF1641 0.15 +0.5 291,088 + GFF1641 0.28 -2.1 291,237 + GFF1641 0.33 -0.9 291,348 + GFF1641 0.36 -0.7 291,399 + GFF1641 0.38 +0.9 291,400 - GFF1641 0.38 -0.1 291,944 - GFF1641 0.54 -0.9 292,040 + GFF1641 0.57 -0.2 292,140 + GFF1641 0.60 +1.4 292,259 + GFF1641 0.64 -1.3 292,259 + GFF1641 0.64 +1.0 292,259 + GFF1641 0.64 +0.2 292,259 + GFF1641 0.64 +0.7 292,260 - GFF1641 0.64 -0.9 292,260 - GFF1641 0.64 -0.9 292,260 - GFF1641 0.64 -0.3 292,260 - GFF1641 0.64 +1.0 292,318 - GFF1641 0.65 -1.1 292,686 + GFF1641 0.76 -0.0 292,779 + GFF1641 0.79 -0.8 292,779 + GFF1641 0.79 -0.2 292,780 - GFF1641 0.79 -0.5 292,896 + GFF1641 0.83 -1.2 292,897 - GFF1641 0.83 -0.3 293,070 + GFF1641 0.88 +1.1 293,395 + +0.7 293,497 + -0.3 293,498 - +0.2 293,515 + -0.3 293,515 + -0.5 293,520 + +0.5 293,693 - -0.8 293,880 + GFF1642 0.18 -0.7 293,880 + GFF1642 0.18 +0.9 293,881 - GFF1642 0.18 -0.0 294,025 - GFF1642 0.36 +1.1 294,094 + GFF1642 0.45 +0.2 294,094 + GFF1642 0.45 +0.5 294,094 + GFF1642 0.45 -1.6 294,095 - GFF1642 0.45 -0.4 294,306 + GFF1642 0.72 -0.7 294,307 - GFF1642 0.72 +0.4 294,307 - GFF1642 0.72 +0.3
Or see this region's nucleotide sequence