Strain Fitness in Xanthobacter sp. DMC5 around GFF1608

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1607 and GFF1608 are separated by 90 nucleotidesGFF1608 and GFF1609 are separated by 135 nucleotidesGFF1609 and GFF1610 are separated by 57 nucleotides GFF1607 - hypothetical protein, at 257,089 to 258,309 GFF1607 GFF1608 - Alcohol dehydrogenase [acceptor], at 258,400 to 260,055 GFF1608 GFF1609 - HTH-type transcriptional repressor RspR, at 260,191 to 260,922 GFF1609 GFF1610 - 2-hydroxy-3-oxopropionate reductase, at 260,980 to 261,927 GFF1610 Position (kb) 258 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.771 kb on + strand, within GFF1607at 257.772 kb on - strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.921 kb on + strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 258.300 kb on + strandat 258.301 kb on - strandat 258.301 kb on - strandat 258.345 kb on - strandat 258.379 kb on + strandat 258.443 kb on - strandat 258.482 kb on + strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.623 kb on + strand, within GFF1608at 258.624 kb on - strand, within GFF1608at 258.624 kb on - strand, within GFF1608at 258.662 kb on + strand, within GFF1608at 258.710 kb on + strand, within GFF1608at 258.711 kb on - strand, within GFF1608at 258.738 kb on - strand, within GFF1608at 258.741 kb on + strand, within GFF1608at 258.748 kb on - strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 259.004 kb on + strand, within GFF1608at 259.004 kb on + strand, within GFF1608at 259.005 kb on - strand, within GFF1608at 259.143 kb on - strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.255 kb on - strand, within GFF1608at 259.255 kb on - strand, within GFF1608at 259.453 kb on - strand, within GFF1608at 259.482 kb on - strand, within GFF1608at 259.511 kb on + strand, within GFF1608at 259.664 kb on + strand, within GFF1608at 259.665 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 260.062 kb on - strandat 260.420 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.653 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.871 kb on + strandat 260.871 kb on + strandat 260.872 kb on - strandat 260.872 kb on - strandat 260.920 kb on + strandat 260.921 kb on - strandat 260.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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257,522 + GFF1607 0.35 -0.9
257,522 + GFF1607 0.35 -1.3
257,522 + GFF1607 0.35 +0.3
257,522 + GFF1607 0.35 +0.9
257,522 + GFF1607 0.35 -0.6
257,522 + GFF1607 0.35 -0.1
257,523 - GFF1607 0.36 +0.5
257,523 - GFF1607 0.36 -1.3
257,523 - GFF1607 0.36 -0.1
257,660 + GFF1607 0.47 +0.0
257,660 + GFF1607 0.47 +0.0
257,660 + GFF1607 0.47 -0.3
257,661 - GFF1607 0.47 +0.6
257,661 - GFF1607 0.47 +0.7
257,661 - GFF1607 0.47 +0.2
257,661 - GFF1607 0.47 +0.4
257,661 - GFF1607 0.47 -0.1
257,705 - GFF1607 0.50 -0.3
257,705 - GFF1607 0.50 -1.4
257,771 + GFF1607 0.56 +0.0
257,772 - GFF1607 0.56 +0.1
257,796 + GFF1607 0.58 +0.1
257,796 + GFF1607 0.58 -0.3
257,846 + GFF1607 0.62 -0.1
257,846 + GFF1607 0.62 +0.1
257,846 + GFF1607 0.62 -0.5
257,846 + GFF1607 0.62 -3.5
257,846 + GFF1607 0.62 +0.6
257,846 + GFF1607 0.62 +0.1
257,846 + GFF1607 0.62 -0.8
257,847 - GFF1607 0.62 -0.7
257,847 - GFF1607 0.62 -2.1
257,847 - GFF1607 0.62 -0.6
257,847 - GFF1607 0.62 +1.9
257,847 - GFF1607 0.62 +0.1
257,847 - GFF1607 0.62 -0.3
257,847 - GFF1607 0.62 -0.6
257,847 - GFF1607 0.62 -0.8
257,847 - GFF1607 0.62 +1.1
257,850 + GFF1607 0.62 +0.4
257,850 + GFF1607 0.62 -0.1
257,850 + GFF1607 0.62 +0.0
257,850 + GFF1607 0.62 -0.4
257,850 + GFF1607 0.62 -1.6
257,851 - GFF1607 0.62 -0.5
257,851 - GFF1607 0.62 -0.7
257,851 - GFF1607 0.62 +0.6
257,851 - GFF1607 0.62 -0.7
257,851 - GFF1607 0.62 +0.6
257,851 - GFF1607 0.62 +0.8
257,921 + GFF1607 0.68 -0.1
257,922 - GFF1607 0.68 +1.0
257,922 - GFF1607 0.68 +0.3
257,922 - GFF1607 0.68 -0.2
257,922 - GFF1607 0.68 +0.1
258,300 + -0.5
258,301 - +0.5
258,301 - +0.2
258,345 - -1.0
258,379 + -0.9
258,443 - +1.3
258,482 + -1.5
258,483 - -0.5
258,483 - -0.1
258,483 - -0.5
258,483 - +0.0
258,483 - -0.3
258,623 + GFF1608 0.13 -0.3
258,624 - GFF1608 0.14 -0.5
258,624 - GFF1608 0.14 +1.2
258,662 + GFF1608 0.16 +0.7
258,710 + GFF1608 0.19 -0.6
258,711 - GFF1608 0.19 +0.1
258,738 - GFF1608 0.20 -0.5
258,741 + GFF1608 0.21 -0.9
258,748 - GFF1608 0.21 -0.2
258,797 + GFF1608 0.24 +0.3
258,797 + GFF1608 0.24 -0.2
258,797 + GFF1608 0.24 -0.4
258,797 + GFF1608 0.24 +0.2
258,797 + GFF1608 0.24 +0.3
258,798 - GFF1608 0.24 +0.2
258,798 - GFF1608 0.24 +0.6
258,798 - GFF1608 0.24 -0.5
258,798 - GFF1608 0.24 -0.1
258,798 - GFF1608 0.24 +0.4
258,798 - GFF1608 0.24 +0.3
258,798 - GFF1608 0.24 -0.2
258,798 - GFF1608 0.24 +0.9
259,004 + GFF1608 0.36 +1.1
259,004 + GFF1608 0.36 -0.1
259,005 - GFF1608 0.37 -0.4
259,143 - GFF1608 0.45 -1.3
259,254 + GFF1608 0.52 +0.6
259,254 + GFF1608 0.52 +0.7
259,254 + GFF1608 0.52 +0.3
259,255 - GFF1608 0.52 -0.6
259,255 - GFF1608 0.52 -0.6
259,453 - GFF1608 0.64 +0.6
259,482 - GFF1608 0.65 -0.3
259,511 + GFF1608 0.67 -1.1
259,664 + GFF1608 0.76 -0.4
259,665 - GFF1608 0.76 -1.3
259,746 - GFF1608 0.81 +0.4
259,746 - GFF1608 0.81 -0.6
259,746 - GFF1608 0.81 -0.8
259,746 - GFF1608 0.81 -0.0
259,746 - GFF1608 0.81 +0.3
259,854 - GFF1608 0.88 -0.4
259,854 - GFF1608 0.88 -0.5
259,854 - GFF1608 0.88 -0.1
260,062 - +0.0
260,420 + GFF1609 0.31 +0.4
260,429 + GFF1609 0.33 -0.7
260,429 + GFF1609 0.33 -0.8
260,429 + GFF1609 0.33 -0.1
260,429 + GFF1609 0.33 -0.4
260,430 - GFF1609 0.33 -0.2
260,430 - GFF1609 0.33 -0.2
260,512 + GFF1609 0.44 +0.4
260,512 + GFF1609 0.44 +1.3
260,512 + GFF1609 0.44 -0.0
260,512 + GFF1609 0.44 -0.6
260,512 + GFF1609 0.44 -0.1
260,512 + GFF1609 0.44 -1.5
260,513 - GFF1609 0.44 +0.3
260,513 - GFF1609 0.44 -1.0
260,513 - GFF1609 0.44 +0.3
260,646 + GFF1609 0.62 +0.6
260,646 + GFF1609 0.62 +0.5
260,646 + GFF1609 0.62 -0.2
260,646 + GFF1609 0.62 -0.9
260,647 - GFF1609 0.62 +0.8
260,647 - GFF1609 0.62 -2.0
260,647 - GFF1609 0.62 +0.6
260,652 + GFF1609 0.63 +0.1
260,652 + GFF1609 0.63 +0.6
260,653 - GFF1609 0.63 +0.7
260,672 - GFF1609 0.66 +0.3
260,672 - GFF1609 0.66 -0.6
260,871 + +0.1
260,871 + -1.3
260,872 - +0.8
260,872 - +0.0
260,920 + -0.2
260,921 - +0.7
260,956 + +0.6

Or see this region's nucleotide sequence