Strain Fitness in Xanthobacter sp. DMC5 around GFF1565

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1564 and GFF1565 overlap by 11 nucleotidesGFF1565 and GFF1566 are separated by 154 nucleotides GFF1564 - Sensor histidine kinase RcsC, at 203,738 to 204,901 GFF1564 GFF1565 - Adaptive-response sensory-kinase SasA, at 204,891 to 207,545 GFF1565 GFF1566 - Beta-barrel assembly-enhancing protease, at 207,700 to 210,045 GFF1566 Position (kb) 204 205 206 207 208Strain fitness (log2 ratio) -1 0 1at 203.967 kb on + strand, within GFF1564at 203.968 kb on - strand, within GFF1564at 203.968 kb on - strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.380 kb on + strand, within GFF1564at 204.381 kb on - strand, within GFF1564at 204.381 kb on - strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.582 kb on + strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.583 kb on - strand, within GFF1564at 204.633 kb on + strand, within GFF1564at 204.634 kb on - strand, within GFF1564at 204.803 kb on + strandat 204.804 kb on - strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.810 kb on + strandat 204.811 kb on - strandat 204.811 kb on - strandat 205.780 kb on + strand, within GFF1565at 205.781 kb on - strand, within GFF1565at 205.781 kb on - strand, within GFF1565at 206.009 kb on - strand, within GFF1565at 206.030 kb on - strand, within GFF1565at 206.030 kb on - strand, within GFF1565at 206.110 kb on + strand, within GFF1565at 206.110 kb on + strand, within GFF1565at 206.110 kb on + strand, within GFF1565at 206.111 kb on - strand, within GFF1565at 206.111 kb on - strand, within GFF1565at 206.113 kb on + strand, within GFF1565at 206.113 kb on + strand, within GFF1565at 206.113 kb on + strand, within GFF1565at 206.113 kb on + strand, within GFF1565at 206.114 kb on - strand, within GFF1565at 206.114 kb on - strand, within GFF1565at 206.152 kb on - strand, within GFF1565at 206.185 kb on + strand, within GFF1565at 206.185 kb on + strand, within GFF1565at 206.186 kb on - strand, within GFF1565at 206.186 kb on - strand, within GFF1565at 206.186 kb on - strand, within GFF1565at 206.390 kb on - strand, within GFF1565at 206.492 kb on - strand, within GFF1565at 206.492 kb on - strand, within GFF1565at 206.492 kb on - strand, within GFF1565at 206.513 kb on - strand, within GFF1565at 206.644 kb on + strand, within GFF1565at 206.644 kb on + strand, within GFF1565at 206.645 kb on - strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.650 kb on + strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.651 kb on - strand, within GFF1565at 206.827 kb on + strand, within GFF1565at 206.827 kb on + strand, within GFF1565at 206.828 kb on - strand, within GFF1565at 206.828 kb on - strand, within GFF1565at 207.094 kb on + strand, within GFF1565at 207.122 kb on - strand, within GFF1565at 207.187 kb on + strand, within GFF1565at 207.188 kb on - strand, within GFF1565at 207.188 kb on - strand, within GFF1565at 207.218 kb on - strand, within GFF1565at 207.263 kb on - strand, within GFF1565at 207.274 kb on + strand, within GFF1565at 207.274 kb on + strand, within GFF1565at 207.275 kb on - strand, within GFF1565at 207.278 kb on - strand, within GFF1565at 207.352 kb on + strandat 207.352 kb on + strandat 207.353 kb on - strandat 207.353 kb on - strandat 207.463 kb on + strandat 207.464 kb on - strandat 207.464 kb on - strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.476 kb on - strandat 207.511 kb on + strandat 207.511 kb on + strandat 207.562 kb on + strandat 207.562 kb on + strandat 207.562 kb on + strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.921 kb on - strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.932 kb on + strandat 207.993 kb on - strand, within GFF1566at 207.993 kb on - strand, within GFF1566at 208.112 kb on + strand, within GFF1566at 208.277 kb on + strand, within GFF1566

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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203,967 + GFF1564 0.20 -1.0
203,968 - GFF1564 0.20 +0.3
203,968 - GFF1564 0.20 +0.1
204,380 + GFF1564 0.55 -0.4
204,380 + GFF1564 0.55 -0.6
204,380 + GFF1564 0.55 +1.0
204,381 - GFF1564 0.55 -1.7
204,381 - GFF1564 0.55 +0.4
204,582 + GFF1564 0.73 +0.9
204,582 + GFF1564 0.73 +0.4
204,582 + GFF1564 0.73 -0.4
204,582 + GFF1564 0.73 +0.0
204,582 + GFF1564 0.73 +0.1
204,582 + GFF1564 0.73 +0.1
204,582 + GFF1564 0.73 +0.2
204,582 + GFF1564 0.73 -0.4
204,583 - GFF1564 0.73 +1.1
204,583 - GFF1564 0.73 +0.4
204,583 - GFF1564 0.73 +0.9
204,633 + GFF1564 0.77 -0.1
204,634 - GFF1564 0.77 +0.0
204,803 + -0.4
204,804 - +0.3
204,810 + -0.4
204,810 + -0.2
204,810 + -0.1
204,810 + +0.6
204,810 + +0.5
204,810 + -0.3
204,810 + +0.0
204,810 + -0.8
204,811 - -0.7
204,811 - -0.0
205,780 + GFF1565 0.33 +0.2
205,781 - GFF1565 0.34 +0.1
205,781 - GFF1565 0.34 -0.2
206,009 - GFF1565 0.42 +0.3
206,030 - GFF1565 0.43 -0.3
206,030 - GFF1565 0.43 -0.1
206,110 + GFF1565 0.46 -0.2
206,110 + GFF1565 0.46 -0.6
206,110 + GFF1565 0.46 -0.3
206,111 - GFF1565 0.46 +0.2
206,111 - GFF1565 0.46 +1.0
206,113 + GFF1565 0.46 +0.4
206,113 + GFF1565 0.46 -1.0
206,113 + GFF1565 0.46 +1.0
206,113 + GFF1565 0.46 -0.5
206,114 - GFF1565 0.46 +0.9
206,114 - GFF1565 0.46 -0.7
206,152 - GFF1565 0.47 -0.8
206,185 + GFF1565 0.49 +0.9
206,185 + GFF1565 0.49 -0.3
206,186 - GFF1565 0.49 +0.7
206,186 - GFF1565 0.49 -0.9
206,186 - GFF1565 0.49 -0.6
206,390 - GFF1565 0.56 +0.7
206,492 - GFF1565 0.60 +0.2
206,492 - GFF1565 0.60 -1.1
206,492 - GFF1565 0.60 +0.1
206,513 - GFF1565 0.61 -0.8
206,644 + GFF1565 0.66 +0.9
206,644 + GFF1565 0.66 +0.9
206,645 - GFF1565 0.66 +0.9
206,650 + GFF1565 0.66 -0.4
206,650 + GFF1565 0.66 -0.1
206,650 + GFF1565 0.66 +0.4
206,650 + GFF1565 0.66 +0.2
206,650 + GFF1565 0.66 -1.6
206,650 + GFF1565 0.66 -0.2
206,650 + GFF1565 0.66 +0.6
206,650 + GFF1565 0.66 -0.8
206,650 + GFF1565 0.66 -0.3
206,650 + GFF1565 0.66 -1.2
206,650 + GFF1565 0.66 -0.8
206,651 - GFF1565 0.66 -1.3
206,651 - GFF1565 0.66 +0.1
206,651 - GFF1565 0.66 +0.9
206,651 - GFF1565 0.66 +0.7
206,651 - GFF1565 0.66 +0.7
206,651 - GFF1565 0.66 +1.2
206,651 - GFF1565 0.66 -0.6
206,651 - GFF1565 0.66 +0.9
206,827 + GFF1565 0.73 -0.2
206,827 + GFF1565 0.73 -0.4
206,828 - GFF1565 0.73 -1.2
206,828 - GFF1565 0.73 +0.0
207,094 + GFF1565 0.83 +0.2
207,122 - GFF1565 0.84 +0.1
207,187 + GFF1565 0.86 -0.6
207,188 - GFF1565 0.87 +0.2
207,188 - GFF1565 0.87 +1.1
207,218 - GFF1565 0.88 -0.1
207,263 - GFF1565 0.89 -0.0
207,274 + GFF1565 0.90 +0.8
207,274 + GFF1565 0.90 +0.1
207,275 - GFF1565 0.90 -0.9
207,278 - GFF1565 0.90 +0.3
207,352 + -0.4
207,352 + +0.4
207,353 - +0.3
207,353 - +0.0
207,463 + +0.8
207,464 - -0.2
207,464 - -0.8
207,475 + -0.1
207,475 + -0.9
207,475 + +0.4
207,475 + +0.3
207,476 - +0.4
207,511 + -0.8
207,511 + +0.7
207,562 + +0.6
207,562 + +0.2
207,562 + +0.9
207,563 - +0.8
207,563 - -0.5
207,563 - -0.6
207,563 - -0.9
207,921 - -0.3
207,926 + +0.7
207,926 + -0.8
207,926 + +1.0
207,927 - +1.0
207,927 - +0.3
207,927 - -0.1
207,927 - +0.2
207,932 + -0.3
207,993 - GFF1566 0.12 +0.0
207,993 - GFF1566 0.12 +0.6
208,112 + GFF1566 0.18 -0.1
208,277 + GFF1566 0.25 -0.1

Or see this region's nucleotide sequence