Strain Fitness in Xanthobacter sp. DMC5 around GFF1557

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1556 and GFF1557 overlap by 8 nucleotidesGFF1557 and GFF1558 overlap by 11 nucleotides GFF1556 - Oligosaccharides import ATP-binding protein MsmX, at 195,196 to 196,290 GFF1556 GFF1557 - Xylulose kinase, at 196,283 to 197,839 GFF1557 GFF1558 - putative FAD-linked oxidoreductase, at 197,829 to 199,334 GFF1558 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 195.306 kb on + strand, within GFF1556at 195.306 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.254 kb on - strandat 196.254 kb on - strandat 196.254 kb on - strandat 196.254 kb on - strandat 196.337 kb on + strandat 196.337 kb on + strandat 196.337 kb on + strandat 196.392 kb on + strandat 196.392 kb on + strandat 196.413 kb on + strandat 196.413 kb on + strandat 196.413 kb on + strandat 196.491 kb on + strand, within GFF1557at 196.678 kb on - strand, within GFF1557at 196.689 kb on + strand, within GFF1557at 196.704 kb on + strand, within GFF1557at 196.806 kb on + strand, within GFF1557at 196.806 kb on + strand, within GFF1557at 196.807 kb on - strand, within GFF1557at 196.965 kb on + strand, within GFF1557at 196.965 kb on + strand, within GFF1557at 196.966 kb on - strand, within GFF1557at 196.992 kb on + strand, within GFF1557at 196.992 kb on + strand, within GFF1557at 197.064 kb on - strand, within GFF1557at 197.064 kb on - strand, within GFF1557at 197.100 kb on + strand, within GFF1557at 197.192 kb on + strand, within GFF1557at 197.338 kb on + strand, within GFF1557at 197.339 kb on - strand, within GFF1557at 197.370 kb on + strand, within GFF1557at 197.370 kb on + strand, within GFF1557at 197.474 kb on + strand, within GFF1557at 197.474 kb on + strand, within GFF1557at 197.475 kb on - strand, within GFF1557at 197.475 kb on - strand, within GFF1557at 198.112 kb on + strand, within GFF1558at 198.112 kb on + strand, within GFF1558at 198.113 kb on - strand, within GFF1558at 198.113 kb on - strand, within GFF1558at 198.113 kb on - strand, within GFF1558at 198.133 kb on + strand, within GFF1558at 198.205 kb on + strand, within GFF1558at 198.205 kb on + strand, within GFF1558at 198.205 kb on + strand, within GFF1558at 198.205 kb on + strand, within GFF1558at 198.205 kb on + strand, within GFF1558at 198.206 kb on - strand, within GFF1558at 198.206 kb on - strand, within GFF1558at 198.206 kb on - strand, within GFF1558at 198.256 kb on + strand, within GFF1558at 198.257 kb on - strand, within GFF1558at 198.257 kb on - strand, within GFF1558at 198.257 kb on - strand, within GFF1558at 198.260 kb on - strand, within GFF1558at 198.286 kb on + strand, within GFF1558at 198.287 kb on - strand, within GFF1558at 198.296 kb on - strand, within GFF1558at 198.296 kb on - strand, within GFF1558at 198.320 kb on - strand, within GFF1558at 198.775 kb on + strand, within GFF1558at 198.811 kb on - strand, within GFF1558

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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195,306 + GFF1556 0.10 -0.2
195,306 + GFF1556 0.10 -0.6
195,626 + GFF1556 0.39 +0.1
195,626 + GFF1556 0.39 -1.3
195,626 + GFF1556 0.39 -0.6
195,626 + GFF1556 0.39 -0.2
195,626 + GFF1556 0.39 +1.2
195,627 - GFF1556 0.39 -0.7
195,627 - GFF1556 0.39 -0.8
195,627 - GFF1556 0.39 -0.3
195,627 - GFF1556 0.39 +0.7
195,725 + GFF1556 0.48 -0.2
195,725 + GFF1556 0.48 -0.1
195,725 + GFF1556 0.48 +0.6
195,726 - GFF1556 0.48 -0.8
195,726 - GFF1556 0.48 -0.9
195,726 - GFF1556 0.48 +0.7
195,726 - GFF1556 0.48 +1.5
195,726 - GFF1556 0.48 +1.3
196,014 - GFF1556 0.75 -0.9
196,014 - GFF1556 0.75 +0.4
196,041 - GFF1556 0.77 -0.3
196,041 - GFF1556 0.77 +0.2
196,041 - GFF1556 0.77 +0.3
196,041 - GFF1556 0.77 +0.1
196,041 - GFF1556 0.77 +0.7
196,254 - +0.2
196,254 - +0.6
196,254 - +1.5
196,254 - +1.4
196,337 + +0.1
196,337 + +0.5
196,337 + -0.7
196,392 + +1.2
196,392 + +1.0
196,413 + +0.6
196,413 + -1.7
196,413 + +0.3
196,491 + GFF1557 0.13 -1.2
196,678 - GFF1557 0.25 +1.5
196,689 + GFF1557 0.26 -0.1
196,704 + GFF1557 0.27 +0.1
196,806 + GFF1557 0.34 -0.4
196,806 + GFF1557 0.34 +0.7
196,807 - GFF1557 0.34 -0.4
196,965 + GFF1557 0.44 -0.8
196,965 + GFF1557 0.44 -2.6
196,966 - GFF1557 0.44 -1.4
196,992 + GFF1557 0.46 -0.2
196,992 + GFF1557 0.46 -1.1
197,064 - GFF1557 0.50 +0.6
197,064 - GFF1557 0.50 -0.8
197,100 + GFF1557 0.52 +0.2
197,192 + GFF1557 0.58 -0.9
197,338 + GFF1557 0.68 +0.3
197,339 - GFF1557 0.68 -0.5
197,370 + GFF1557 0.70 +0.0
197,370 + GFF1557 0.70 -0.4
197,474 + GFF1557 0.76 -0.3
197,474 + GFF1557 0.76 -0.0
197,475 - GFF1557 0.77 -1.9
197,475 - GFF1557 0.77 +0.5
198,112 + GFF1558 0.19 +1.9
198,112 + GFF1558 0.19 -1.7
198,113 - GFF1558 0.19 -1.1
198,113 - GFF1558 0.19 +1.0
198,113 - GFF1558 0.19 -1.4
198,133 + GFF1558 0.20 +0.7
198,205 + GFF1558 0.25 +2.3
198,205 + GFF1558 0.25 +0.0
198,205 + GFF1558 0.25 -0.3
198,205 + GFF1558 0.25 -1.0
198,205 + GFF1558 0.25 +1.2
198,206 - GFF1558 0.25 -0.9
198,206 - GFF1558 0.25 -0.2
198,206 - GFF1558 0.25 +0.8
198,256 + GFF1558 0.28 -0.8
198,257 - GFF1558 0.28 -0.3
198,257 - GFF1558 0.28 -0.1
198,257 - GFF1558 0.28 +0.6
198,260 - GFF1558 0.29 -0.1
198,286 + GFF1558 0.30 -0.4
198,287 - GFF1558 0.30 -0.6
198,296 - GFF1558 0.31 -0.2
198,296 - GFF1558 0.31 -0.1
198,320 - GFF1558 0.33 +0.5
198,775 + GFF1558 0.63 -0.1
198,811 - GFF1558 0.65 +0.2

Or see this region's nucleotide sequence