Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1541 and GFF1542 are separated by 136 nucleotides GFF1542 and GFF1543 are separated by 46 nucleotides GFF1543 and GFF1544 are separated by 141 nucleotides GFF1544 and GFF1545 are separated by 13 nucleotides
GFF1541 - HTH-type transcriptional activator RhaR, at 182,001 to 182,897
GFF1541
GFF1542 - hypothetical protein, at 183,034 to 183,657
GFF1542
GFF1543 - hypothetical protein, at 183,704 to 184,225
GFF1543
GFF1544 - hypothetical protein, at 184,367 to 184,705
GFF1544
GFF1545 - Cobalt-containing nitrile hydratase subunit alpha, at 184,719 to 185,345
GFF1545
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 182.935 kb on - strand at 182.935 kb on - strand at 182.955 kb on - strand at 182.975 kb on + strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.983 kb on - strand at 182.995 kb on - strand at 183.198 kb on - strand, within GFF1542 at 183.249 kb on - strand, within GFF1542 at 183.497 kb on - strand, within GFF1542 at 183.771 kb on + strand, within GFF1543 at 183.772 kb on - strand, within GFF1543 at 183.901 kb on - strand, within GFF1543 at 183.906 kb on + strand, within GFF1543 at 183.907 kb on - strand, within GFF1543 at 183.907 kb on - strand, within GFF1543 at 183.943 kb on - strand, within GFF1543 at 183.957 kb on + strand, within GFF1543 at 183.957 kb on + strand, within GFF1543 at 183.957 kb on + strand, within GFF1543 at 183.958 kb on - strand, within GFF1543 at 183.958 kb on - strand, within GFF1543 at 183.958 kb on - strand, within GFF1543 at 184.308 kb on - strand at 184.323 kb on + strand at 184.323 kb on + strand at 184.324 kb on - strand at 184.324 kb on - strand at 184.324 kb on - strand at 184.324 kb on - strand at 184.324 kb on - strand at 184.401 kb on + strand, within GFF1544 at 184.485 kb on + strand, within GFF1544 at 184.489 kb on - strand, within GFF1544 at 184.575 kb on + strand, within GFF1544 at 184.576 kb on - strand, within GFF1544 at 184.576 kb on - strand, within GFF1544 at 184.695 kb on + strand at 184.695 kb on + strand at 184.695 kb on + strand at 184.695 kb on + strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.696 kb on - strand at 184.697 kb on + strand at 184.828 kb on + strand, within GFF1545 at 184.828 kb on + strand, within GFF1545 at 184.829 kb on - strand, within GFF1545 at 184.957 kb on + strand, within GFF1545
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 182,935 - -1.2 182,935 - -0.2 182,955 - +0.1 182,975 + -0.5 182,976 - -0.0 182,976 - +0.8 182,976 - +0.5 182,976 - -0.1 182,983 - +0.7 182,995 - -0.5 183,198 - GFF1542 0.26 +0.0 183,249 - GFF1542 0.34 -1.6 183,497 - GFF1542 0.74 +1.2 183,771 + GFF1543 0.13 +0.5 183,772 - GFF1543 0.13 -0.5 183,901 - GFF1543 0.38 -0.2 183,906 + GFF1543 0.39 -0.3 183,907 - GFF1543 0.39 -0.4 183,907 - GFF1543 0.39 -0.7 183,943 - GFF1543 0.46 -0.3 183,957 + GFF1543 0.48 -0.2 183,957 + GFF1543 0.48 -0.4 183,957 + GFF1543 0.48 -0.2 183,958 - GFF1543 0.49 +0.4 183,958 - GFF1543 0.49 -0.9 183,958 - GFF1543 0.49 -0.3 184,308 - +0.3 184,323 + +0.5 184,323 + +0.6 184,324 - -0.3 184,324 - +0.1 184,324 - +0.2 184,324 - -0.9 184,324 - -1.0 184,401 + GFF1544 0.10 +0.2 184,485 + GFF1544 0.35 +1.2 184,489 - GFF1544 0.36 -0.2 184,575 + GFF1544 0.61 +1.5 184,576 - GFF1544 0.62 -0.9 184,576 - GFF1544 0.62 -0.8 184,695 + -0.0 184,695 + +1.2 184,695 + +0.8 184,695 + -0.1 184,696 - -1.0 184,696 - +0.4 184,696 - +0.5 184,696 - +0.0 184,696 - +0.3 184,696 - -0.4 184,696 - -0.4 184,697 + +0.0 184,828 + GFF1545 0.17 -0.3 184,828 + GFF1545 0.17 +0.0 184,829 - GFF1545 0.18 -0.8 184,957 + GFF1545 0.38 +0.8
Or see this region's nucleotide sequence