Strain Fitness in Xanthobacter sp. DMC5 around GFF1534

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1533 and GFF1534 are separated by 24 nucleotidesGFF1534 and GFF1535 overlap by 4 nucleotidesGFF1535 and GFF1536 are separated by 3 nucleotides GFF1533 - HTH-type transcriptional regulator GntR, at 174,301 to 175,353 GFF1533 GFF1534 - Enterobactin exporter EntS, at 175,378 to 176,988 GFF1534 GFF1535 - hypothetical protein, at 176,985 to 177,422 GFF1535 GFF1536 - Imidazolonepropionase, at 177,426 to 179,291 GFF1536 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 174.463 kb on + strand, within GFF1533at 174.463 kb on + strand, within GFF1533at 174.464 kb on - strand, within GFF1533at 174.464 kb on - strand, within GFF1533at 174.464 kb on - strand, within GFF1533at 174.464 kb on - strand, within GFF1533at 174.464 kb on - strand, within GFF1533at 174.469 kb on + strand, within GFF1533at 174.469 kb on + strand, within GFF1533at 174.470 kb on - strand, within GFF1533at 174.625 kb on + strand, within GFF1533at 174.625 kb on + strand, within GFF1533at 174.626 kb on - strand, within GFF1533at 174.864 kb on + strand, within GFF1533at 174.922 kb on + strand, within GFF1533at 174.923 kb on - strand, within GFF1533at 175.207 kb on + strand, within GFF1533at 175.207 kb on + strand, within GFF1533at 175.207 kb on + strand, within GFF1533at 175.580 kb on + strand, within GFF1534at 175.580 kb on + strand, within GFF1534at 175.580 kb on + strand, within GFF1534at 175.580 kb on + strand, within GFF1534at 175.580 kb on + strand, within GFF1534at 175.581 kb on - strand, within GFF1534at 175.661 kb on + strand, within GFF1534at 175.907 kb on + strand, within GFF1534at 175.908 kb on - strand, within GFF1534at 175.908 kb on - strand, within GFF1534at 175.908 kb on - strand, within GFF1534at 175.908 kb on - strand, within GFF1534at 175.938 kb on + strand, within GFF1534at 175.938 kb on + strand, within GFF1534at 175.938 kb on + strand, within GFF1534at 175.939 kb on - strand, within GFF1534at 176.183 kb on + strand, within GFF1534at 176.184 kb on - strand, within GFF1534at 176.186 kb on + strand, within GFF1534at 176.313 kb on - strand, within GFF1534at 176.414 kb on + strand, within GFF1534at 176.414 kb on + strand, within GFF1534at 176.414 kb on + strand, within GFF1534at 176.435 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 177.022 kb on + strandat 177.023 kb on - strandat 177.023 kb on - strandat 177.328 kb on + strand, within GFF1535at 177.601 kb on + strandat 177.601 kb on + strandat 177.602 kb on - strandat 177.757 kb on + strand, within GFF1536at 177.757 kb on + strand, within GFF1536at 177.758 kb on - strand, within GFF1536at 177.758 kb on - strand, within GFF1536at 177.899 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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174,463 + GFF1533 0.15 -0.3
174,463 + GFF1533 0.15 -0.4
174,464 - GFF1533 0.15 -1.8
174,464 - GFF1533 0.15 -0.3
174,464 - GFF1533 0.15 -0.8
174,464 - GFF1533 0.15 -0.8
174,464 - GFF1533 0.15 -1.5
174,469 + GFF1533 0.16 -1.7
174,469 + GFF1533 0.16 -2.0
174,470 - GFF1533 0.16 -0.3
174,625 + GFF1533 0.31 +0.1
174,625 + GFF1533 0.31 -0.6
174,626 - GFF1533 0.31 -0.0
174,864 + GFF1533 0.53 -0.9
174,922 + GFF1533 0.59 -1.1
174,923 - GFF1533 0.59 -0.7
175,207 + GFF1533 0.86 -0.4
175,207 + GFF1533 0.86 -0.6
175,207 + GFF1533 0.86 -1.4
175,580 + GFF1534 0.13 +0.1
175,580 + GFF1534 0.13 +0.1
175,580 + GFF1534 0.13 -0.4
175,580 + GFF1534 0.13 +1.0
175,580 + GFF1534 0.13 +0.2
175,581 - GFF1534 0.13 +1.0
175,661 + GFF1534 0.18 +0.3
175,907 + GFF1534 0.33 +0.6
175,908 - GFF1534 0.33 +0.5
175,908 - GFF1534 0.33 -0.4
175,908 - GFF1534 0.33 -1.3
175,908 - GFF1534 0.33 +0.9
175,938 + GFF1534 0.35 -0.9
175,938 + GFF1534 0.35 +0.5
175,938 + GFF1534 0.35 -0.3
175,939 - GFF1534 0.35 -0.7
176,183 + GFF1534 0.50 -1.2
176,184 - GFF1534 0.50 -0.2
176,186 + GFF1534 0.50 -0.3
176,313 - GFF1534 0.58 +0.6
176,414 + GFF1534 0.64 +0.8
176,414 + GFF1534 0.64 -1.3
176,414 + GFF1534 0.64 +0.5
176,435 + GFF1534 0.66 +0.2
176,649 + GFF1534 0.79 -0.1
176,649 + GFF1534 0.79 -0.8
176,649 + GFF1534 0.79 -0.2
176,649 + GFF1534 0.79 -0.1
176,649 + GFF1534 0.79 +0.1
176,649 + GFF1534 0.79 -1.2
176,649 + GFF1534 0.79 +0.4
176,650 - GFF1534 0.79 +0.3
176,650 - GFF1534 0.79 +0.4
176,650 - GFF1534 0.79 -0.4
176,650 - GFF1534 0.79 +0.8
176,650 - GFF1534 0.79 -1.8
176,650 - GFF1534 0.79 -0.4
177,022 + +0.3
177,023 - +0.1
177,023 - -0.4
177,328 + GFF1535 0.78 -0.2
177,601 + -0.1
177,601 + +0.2
177,602 - +0.1
177,757 + GFF1536 0.18 -0.6
177,757 + GFF1536 0.18 +0.3
177,758 - GFF1536 0.18 +1.3
177,758 - GFF1536 0.18 +0.3
177,899 - GFF1536 0.25 +0.9
177,960 - GFF1536 0.29 -1.1
177,960 - GFF1536 0.29 -1.2
177,960 - GFF1536 0.29 +0.6
177,961 + GFF1536 0.29 +0.1
177,961 + GFF1536 0.29 +0.3
177,961 + GFF1536 0.29 +0.6
177,962 - GFF1536 0.29 +0.1
177,962 - GFF1536 0.29 +0.3
177,962 - GFF1536 0.29 +0.3
177,962 - GFF1536 0.29 -0.6

Or see this region's nucleotide sequence