Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1436 and GFF1437 are separated by 45 nucleotides GFF1437 and GFF1438 are separated by 89 nucleotides GFF1438 and GFF1439 are separated by 50 nucleotides
GFF1436 - NAD(P)H-dependent FMN reductase, at 59,763 to 60,326
GFF1436
GFF1437 - hypothetical protein, at 60,372 to 60,659
GFF1437
GFF1438 - Ribose import binding protein RbsB, at 60,749 to 61,747
GFF1438
GFF1439 - Ribose import permease protein RbsC, at 61,798 to 62,772
GFF1439
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.942 kb on - strand, within GFF1436 at 59.942 kb on - strand, within GFF1436 at 60.070 kb on + strand, within GFF1436 at 60.070 kb on + strand, within GFF1436 at 60.070 kb on + strand, within GFF1436 at 60.070 kb on + strand, within GFF1436 at 60.071 kb on - strand, within GFF1436 at 60.071 kb on - strand, within GFF1436 at 60.071 kb on - strand, within GFF1436 at 60.071 kb on - strand, within GFF1436 at 60.076 kb on + strand, within GFF1436 at 60.148 kb on + strand, within GFF1436 at 60.175 kb on + strand, within GFF1436 at 60.176 kb on - strand, within GFF1436 at 60.176 kb on - strand, within GFF1436 at 60.262 kb on + strand, within GFF1436 at 60.262 kb on + strand, within GFF1436 at 60.263 kb on - strand, within GFF1436 at 60.263 kb on - strand, within GFF1436 at 60.263 kb on - strand, within GFF1436 at 60.263 kb on - strand, within GFF1436 at 60.263 kb on - strand, within GFF1436 at 60.326 kb on + strand at 60.326 kb on + strand at 60.326 kb on + strand at 60.326 kb on + strand at 60.326 kb on + strand at 60.327 kb on - strand at 60.327 kb on - strand at 60.327 kb on - strand at 60.843 kb on + strand at 60.955 kb on + strand, within GFF1438 at 60.956 kb on - strand, within GFF1438 at 60.956 kb on - strand, within GFF1438 at 60.956 kb on - strand, within GFF1438 at 60.957 kb on + strand, within GFF1438 at 60.957 kb on + strand, within GFF1438 at 60.957 kb on + strand, within GFF1438 at 60.958 kb on - strand, within GFF1438 at 60.958 kb on - strand, within GFF1438 at 61.167 kb on + strand, within GFF1438 at 61.167 kb on + strand, within GFF1438 at 61.168 kb on - strand, within GFF1438 at 61.247 kb on - strand, within GFF1438 at 61.318 kb on - strand, within GFF1438 at 61.344 kb on + strand, within GFF1438 at 61.344 kb on + strand, within GFF1438 at 61.345 kb on - strand, within GFF1438 at 61.345 kb on - strand, within GFF1438 at 61.346 kb on - strand, within GFF1438 at 61.458 kb on + strand, within GFF1438 at 61.458 kb on + strand, within GFF1438 at 61.458 kb on + strand, within GFF1438 at 61.557 kb on + strand, within GFF1438 at 61.557 kb on + strand, within GFF1438 at 61.557 kb on + strand, within GFF1438 at 61.558 kb on - strand, within GFF1438 at 61.558 kb on - strand, within GFF1438 at 61.558 kb on - strand, within GFF1438 at 61.623 kb on + strand, within GFF1438 at 61.624 kb on - strand, within GFF1438 at 61.771 kb on - strand at 61.771 kb on - strand at 62.102 kb on + strand, within GFF1439 at 62.102 kb on + strand, within GFF1439 at 62.102 kb on + strand, within GFF1439 at 62.103 kb on - strand, within GFF1439 at 62.103 kb on - strand, within GFF1439 at 62.103 kb on - strand, within GFF1439 at 62.103 kb on - strand, within GFF1439 at 62.174 kb on + strand, within GFF1439 at 62.174 kb on + strand, within GFF1439 at 62.175 kb on - strand, within GFF1439 at 62.175 kb on - strand, within GFF1439 at 62.175 kb on - strand, within GFF1439 at 62.175 kb on - strand, within GFF1439 at 62.271 kb on - strand, within GFF1439 at 62.330 kb on + strand, within GFF1439 at 62.330 kb on + strand, within GFF1439 at 62.330 kb on + strand, within GFF1439 at 62.330 kb on + strand, within GFF1439 at 62.331 kb on - strand, within GFF1439 at 62.331 kb on - strand, within GFF1439 at 62.333 kb on + strand, within GFF1439 at 62.333 kb on + strand, within GFF1439 at 62.334 kb on - strand, within GFF1439 at 62.334 kb on - strand, within GFF1439 at 62.336 kb on + strand, within GFF1439 at 62.336 kb on + strand, within GFF1439 at 62.336 kb on + strand, within GFF1439 at 62.336 kb on + strand, within GFF1439 at 62.337 kb on - strand, within GFF1439 at 62.337 kb on - strand, within GFF1439 at 62.369 kb on + strand, within GFF1439 at 62.369 kb on + strand, within GFF1439 at 62.369 kb on + strand, within GFF1439 at 62.369 kb on + strand, within GFF1439 at 62.370 kb on - strand, within GFF1439 at 62.370 kb on - strand, within GFF1439 at 62.370 kb on - strand, within GFF1439 at 62.370 kb on - strand, within GFF1439 at 62.523 kb on + strand, within GFF1439 at 62.700 kb on - strand at 62.700 kb on - strand at 62.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 59,942 - GFF1436 0.32 -0.2 59,942 - GFF1436 0.32 +0.2 60,070 + GFF1436 0.54 +1.8 60,070 + GFF1436 0.54 -0.3 60,070 + GFF1436 0.54 -0.6 60,070 + GFF1436 0.54 -0.3 60,071 - GFF1436 0.55 +1.5 60,071 - GFF1436 0.55 -0.4 60,071 - GFF1436 0.55 +0.3 60,071 - GFF1436 0.55 +0.1 60,076 + GFF1436 0.55 -0.1 60,148 + GFF1436 0.68 +0.7 60,175 + GFF1436 0.73 -0.3 60,176 - GFF1436 0.73 -0.2 60,176 - GFF1436 0.73 +0.2 60,262 + GFF1436 0.88 +0.5 60,262 + GFF1436 0.88 +0.2 60,263 - GFF1436 0.89 -0.5 60,263 - GFF1436 0.89 +0.1 60,263 - GFF1436 0.89 +0.9 60,263 - GFF1436 0.89 -0.1 60,263 - GFF1436 0.89 -0.4 60,326 + +0.2 60,326 + +1.7 60,326 + +1.3 60,326 + +0.9 60,326 + -0.4 60,327 - -1.7 60,327 - -1.3 60,327 - -0.3 60,843 + +0.0 60,955 + GFF1438 0.21 +0.6 60,956 - GFF1438 0.21 +0.0 60,956 - GFF1438 0.21 -0.9 60,956 - GFF1438 0.21 -0.9 60,957 + GFF1438 0.21 -0.4 60,957 + GFF1438 0.21 +0.4 60,957 + GFF1438 0.21 -0.4 60,958 - GFF1438 0.21 -0.5 60,958 - GFF1438 0.21 +1.2 61,167 + GFF1438 0.42 +0.2 61,167 + GFF1438 0.42 -0.8 61,168 - GFF1438 0.42 +0.4 61,247 - GFF1438 0.50 +1.0 61,318 - GFF1438 0.57 -0.3 61,344 + GFF1438 0.60 +0.8 61,344 + GFF1438 0.60 +0.0 61,345 - GFF1438 0.60 +1.6 61,345 - GFF1438 0.60 +0.5 61,346 - GFF1438 0.60 +0.2 61,458 + GFF1438 0.71 -0.7 61,458 + GFF1438 0.71 -0.3 61,458 + GFF1438 0.71 +0.5 61,557 + GFF1438 0.81 +0.1 61,557 + GFF1438 0.81 +0.6 61,557 + GFF1438 0.81 +1.0 61,558 - GFF1438 0.81 +0.1 61,558 - GFF1438 0.81 +0.2 61,558 - GFF1438 0.81 +1.1 61,623 + GFF1438 0.87 -0.3 61,624 - GFF1438 0.88 -0.6 61,771 - -0.1 61,771 - +0.2 62,102 + GFF1439 0.31 -0.6 62,102 + GFF1439 0.31 +0.0 62,102 + GFF1439 0.31 -1.7 62,103 - GFF1439 0.31 +0.6 62,103 - GFF1439 0.31 +0.3 62,103 - GFF1439 0.31 -0.6 62,103 - GFF1439 0.31 +1.5 62,174 + GFF1439 0.39 -1.4 62,174 + GFF1439 0.39 -0.4 62,175 - GFF1439 0.39 -0.4 62,175 - GFF1439 0.39 -0.6 62,175 - GFF1439 0.39 +0.1 62,175 - GFF1439 0.39 +1.2 62,271 - GFF1439 0.49 -1.7 62,330 + GFF1439 0.55 -2.1 62,330 + GFF1439 0.55 +0.2 62,330 + GFF1439 0.55 -0.2 62,330 + GFF1439 0.55 +0.4 62,331 - GFF1439 0.55 +0.4 62,331 - GFF1439 0.55 -0.1 62,333 + GFF1439 0.55 +0.3 62,333 + GFF1439 0.55 +0.4 62,334 - GFF1439 0.55 -0.7 62,334 - GFF1439 0.55 +0.2 62,336 + GFF1439 0.55 -0.3 62,336 + GFF1439 0.55 -0.8 62,336 + GFF1439 0.55 +0.2 62,336 + GFF1439 0.55 +0.2 62,337 - GFF1439 0.55 -3.0 62,337 - GFF1439 0.55 +0.4 62,369 + GFF1439 0.59 -0.1 62,369 + GFF1439 0.59 -0.3 62,369 + GFF1439 0.59 -0.1 62,369 + GFF1439 0.59 +0.1 62,370 - GFF1439 0.59 +0.7 62,370 - GFF1439 0.59 -0.0 62,370 - GFF1439 0.59 -0.4 62,370 - GFF1439 0.59 -0.9 62,523 + GFF1439 0.74 -0.2 62,700 - -0.3 62,700 - +0.3 62,700 - -0.1
Or see this region's nucleotide sequence