Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1413 and GFF1414 are separated by 164 nucleotides GFF1414 and GFF1415 are separated by 242 nucleotides GFF1415 and GFF1416 are separated by 226 nucleotides
GFF1413 - D-amino acid dehydrogenase 1, at 35,311 to 36,576
GFF1413
GFF1414 - Leucine-responsive regulatory protein, at 36,741 to 37,199
GFF1414
GFF1415 - hypothetical protein, at 37,442 to 37,681
GFF1415
GFF1416 - hypothetical protein, at 37,908 to 38,390
GFF1416
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.808 kb on - strand, within GFF1413 at 35.829 kb on - strand, within GFF1413 at 35.829 kb on - strand, within GFF1413 at 35.919 kb on - strand, within GFF1413 at 36.087 kb on - strand, within GFF1413 at 36.188 kb on + strand, within GFF1413 at 36.189 kb on - strand, within GFF1413 at 36.425 kb on + strand, within GFF1413 at 36.525 kb on - strand at 36.525 kb on - strand at 36.528 kb on - strand at 36.897 kb on + strand, within GFF1414 at 36.898 kb on - strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.613 kb on + strand, within GFF1415 at 37.614 kb on - strand, within GFF1415 at 37.931 kb on + strand at 37.931 kb on + strand at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 35,808 - GFF1413 0.39 -0.1 35,829 - GFF1413 0.41 -0.4 35,829 - GFF1413 0.41 +0.5 35,919 - GFF1413 0.48 +0.1 36,087 - GFF1413 0.61 +2.5 36,188 + GFF1413 0.69 +0.5 36,189 - GFF1413 0.69 +0.3 36,425 + GFF1413 0.88 +0.3 36,525 - -0.2 36,525 - -0.3 36,528 - +1.0 36,897 + GFF1414 0.34 -1.1 36,898 - GFF1414 0.34 +0.4 37,059 + GFF1414 0.69 +0.1 37,059 + GFF1414 0.69 -0.8 37,060 - GFF1414 0.69 +0.2 37,060 - GFF1414 0.69 -0.3 37,060 - GFF1414 0.69 +1.5 37,613 + GFF1415 0.71 -0.5 37,614 - GFF1415 0.72 -0.4 37,931 + +0.5 37,931 + -1.9 37,980 + GFF1416 0.15 +0.0 37,980 + GFF1416 0.15 -0.1 37,980 + GFF1416 0.15 -0.1 37,980 + GFF1416 0.15 +0.5 37,980 + GFF1416 0.15 +0.3
Or see this region's nucleotide sequence