Strain Fitness in Xanthobacter sp. DMC5 around GFF1038

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1036 and GFF1037 are separated by 31 nucleotidesGFF1037 and GFF1038 overlap by 1 nucleotidesGFF1038 and GFF1039 overlap by 4 nucleotides GFF1036 - hypothetical protein, at 1,115,948 to 1,116,748 GFF1036 GFF1037 - Lipoprotein-releasing system ATP-binding protein LolD, at 1,116,780 to 1,117,517 GFF1037 GFF1038 - Lipoprotein-releasing system transmembrane protein LolE, at 1,117,517 to 1,118,815 GFF1038 GFF1039 - Proline--tRNA ligase, at 1,118,812 to 1,120,134 GFF1039 Position (kb) 1117 1118 1119Strain fitness (log2 ratio) -1 0 1at 1116.517 kb on + strand, within GFF1036at 1116.518 kb on - strand, within GFF1036at 1116.518 kb on - strand, within GFF1036at 1116.528 kb on + strand, within GFF1036at 1116.564 kb on + strand, within GFF1036at 1116.565 kb on - strand, within GFF1036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
1,116,517 + GFF1036 0.71 -0.1
1,116,518 - GFF1036 0.71 -0.8
1,116,518 - GFF1036 0.71 +0.3
1,116,528 + GFF1036 0.72 -0.2
1,116,564 + GFF1036 0.77 +1.5
1,116,565 - GFF1036 0.77 +0.3

Or see this region's nucleotide sequence