Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43790

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43780 and QEN71_RS43785 are separated by 233 nucleotidesQEN71_RS43785 and QEN71_RS43790 overlap by 4 nucleotidesQEN71_RS43790 and QEN71_RS43795 are separated by 82 nucleotidesQEN71_RS43795 and QEN71_RS43800 are separated by 31 nucleotides QEN71_RS43780: QEN71_RS43780 - hypothetical protein, at 235,740 to 236,198 _RS43780 QEN71_RS43785: QEN71_RS43785 - hypothetical protein, at 236,432 to 236,896 _RS43785 QEN71_RS43790: QEN71_RS43790 - hypothetical protein, at 236,893 to 237,285 _RS43790 QEN71_RS43795: QEN71_RS43795 - hypothetical protein, at 237,368 to 237,829 _RS43795 QEN71_RS43800: QEN71_RS43800 - hypothetical protein, at 237,861 to 238,184 _RS43800 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 235.941 kb on + strand, within QEN71_RS43780at 235.941 kb on + strand, within QEN71_RS43780at 235.942 kb on - strand, within QEN71_RS43780at 235.942 kb on - strand, within QEN71_RS43780at 235.942 kb on - strand, within QEN71_RS43780at 236.050 kb on + strand, within QEN71_RS43780at 236.050 kb on + strand, within QEN71_RS43780at 236.051 kb on - strand, within QEN71_RS43780at 236.051 kb on - strand, within QEN71_RS43780at 236.051 kb on - strand, within QEN71_RS43780at 236.176 kb on - strandat 236.214 kb on + strandat 236.214 kb on + strandat 236.215 kb on - strandat 236.249 kb on + strandat 236.270 kb on + strandat 236.270 kb on + strandat 236.271 kb on - strandat 236.271 kb on - strandat 236.271 kb on - strandat 236.271 kb on - strandat 236.271 kb on - strandat 236.284 kb on - strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.418 kb on + strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.419 kb on - strandat 236.463 kb on + strandat 236.463 kb on + strandat 236.464 kb on - strandat 236.464 kb on - strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.471 kb on + strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.472 kb on - strandat 236.474 kb on + strandat 236.474 kb on + strandat 236.483 kb on + strand, within QEN71_RS43785at 236.483 kb on + strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.484 kb on - strand, within QEN71_RS43785at 236.581 kb on + strand, within QEN71_RS43785at 236.582 kb on - strand, within QEN71_RS43785at 236.582 kb on - strand, within QEN71_RS43785at 236.675 kb on + strand, within QEN71_RS43785at 236.676 kb on - strand, within QEN71_RS43785at 236.676 kb on - strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.688 kb on + strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.689 kb on - strand, within QEN71_RS43785at 236.869 kb on - strandat 236.869 kb on - strandat 236.869 kb on - strandat 236.960 kb on + strand, within QEN71_RS43790at 236.961 kb on - strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.996 kb on + strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 236.997 kb on - strand, within QEN71_RS43790at 237.024 kb on + strand, within QEN71_RS43790at 237.025 kb on - strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.099 kb on + strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.100 kb on - strand, within QEN71_RS43790at 237.106 kb on - strand, within QEN71_RS43790at 237.106 kb on - strand, within QEN71_RS43790at 237.264 kb on - strandat 237.264 kb on - strandat 237.408 kb on + strandat 237.409 kb on - strandat 237.576 kb on + strand, within QEN71_RS43795at 237.576 kb on + strand, within QEN71_RS43795at 237.747 kb on + strand, within QEN71_RS43795at 237.747 kb on + strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.748 kb on - strand, within QEN71_RS43795at 237.775 kb on + strand, within QEN71_RS43795at 237.775 kb on + strand, within QEN71_RS43795at 237.815 kb on - strandat 237.815 kb on - strandat 237.815 kb on - strandat 237.957 kb on + strand, within QEN71_RS43800at 237.957 kb on + strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 237.958 kb on - strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.072 kb on + strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.073 kb on - strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.144 kb on + strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800at 238.145 kb on - strand, within QEN71_RS43800

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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235,941 + QEN71_RS43780 0.44 +0.3
235,941 + QEN71_RS43780 0.44 +1.1
235,942 - QEN71_RS43780 0.44 -1.7
235,942 - QEN71_RS43780 0.44 -0.4
235,942 - QEN71_RS43780 0.44 -0.5
236,050 + QEN71_RS43780 0.68 +0.3
236,050 + QEN71_RS43780 0.68 -0.2
236,051 - QEN71_RS43780 0.68 -0.6
236,051 - QEN71_RS43780 0.68 +2.0
236,051 - QEN71_RS43780 0.68 -0.7
236,176 - -0.5
236,214 + -0.0
236,214 + +0.3
236,215 - -0.1
236,249 + -1.3
236,270 + +0.4
236,270 + -1.3
236,271 - +0.1
236,271 - +0.1
236,271 - +0.8
236,271 - +1.9
236,271 - +0.3
236,284 - -0.2
236,418 + +0.9
236,418 + -0.0
236,418 + -0.1
236,418 + -1.1
236,418 + -1.4
236,418 + +1.1
236,419 - +0.0
236,419 - +0.2
236,419 - -0.5
236,419 - -0.1
236,419 - -0.2
236,463 + +0.0
236,463 + -0.1
236,464 - +0.0
236,464 - +0.2
236,471 + +1.0
236,471 + +0.1
236,471 + +0.3
236,471 + -0.5
236,471 + +0.5
236,471 + +0.4
236,471 + +1.6
236,471 + +0.8
236,472 - +0.5
236,472 - -0.1
236,472 - +0.7
236,472 - -0.4
236,472 - -1.5
236,472 - -2.7
236,472 - +0.2
236,472 - -0.7
236,474 + -0.5
236,474 + +1.6
236,483 + QEN71_RS43785 0.11 -1.0
236,483 + QEN71_RS43785 0.11 +0.0
236,484 - QEN71_RS43785 0.11 -0.8
236,484 - QEN71_RS43785 0.11 -0.1
236,484 - QEN71_RS43785 0.11 -0.6
236,484 - QEN71_RS43785 0.11 -0.6
236,581 + QEN71_RS43785 0.32 +0.5
236,582 - QEN71_RS43785 0.32 -0.4
236,582 - QEN71_RS43785 0.32 -0.1
236,675 + QEN71_RS43785 0.52 -1.3
236,676 - QEN71_RS43785 0.52 +0.6
236,676 - QEN71_RS43785 0.52 +1.3
236,688 + QEN71_RS43785 0.55 +0.3
236,688 + QEN71_RS43785 0.55 +1.1
236,688 + QEN71_RS43785 0.55 +0.3
236,689 - QEN71_RS43785 0.55 +0.1
236,689 - QEN71_RS43785 0.55 -0.5
236,689 - QEN71_RS43785 0.55 -0.5
236,689 - QEN71_RS43785 0.55 +0.9
236,689 - QEN71_RS43785 0.55 -0.3
236,689 - QEN71_RS43785 0.55 -1.4
236,869 - -2.0
236,869 - +0.1
236,869 - -0.6
236,960 + QEN71_RS43790 0.17 +0.7
236,961 - QEN71_RS43790 0.17 +0.0
236,996 + QEN71_RS43790 0.26 +1.0
236,996 + QEN71_RS43790 0.26 +0.8
236,996 + QEN71_RS43790 0.26 +0.6
236,996 + QEN71_RS43790 0.26 +1.9
236,997 - QEN71_RS43790 0.26 +0.6
236,997 - QEN71_RS43790 0.26 +0.1
236,997 - QEN71_RS43790 0.26 -0.1
236,997 - QEN71_RS43790 0.26 -0.5
237,024 + QEN71_RS43790 0.33 +0.5
237,025 - QEN71_RS43790 0.34 -0.9
237,099 + QEN71_RS43790 0.52 -0.5
237,099 + QEN71_RS43790 0.52 -0.2
237,099 + QEN71_RS43790 0.52 -0.4
237,100 - QEN71_RS43790 0.53 +0.6
237,100 - QEN71_RS43790 0.53 -1.9
237,100 - QEN71_RS43790 0.53 -1.1
237,100 - QEN71_RS43790 0.53 -1.3
237,100 - QEN71_RS43790 0.53 +1.2
237,106 - QEN71_RS43790 0.54 +0.6
237,106 - QEN71_RS43790 0.54 +0.5
237,264 - +0.0
237,264 - -0.2
237,408 + -2.2
237,409 - +1.2
237,576 + QEN71_RS43795 0.45 -0.4
237,576 + QEN71_RS43795 0.45 +0.3
237,747 + QEN71_RS43795 0.82 -0.2
237,747 + QEN71_RS43795 0.82 -0.1
237,748 - QEN71_RS43795 0.82 -0.2
237,748 - QEN71_RS43795 0.82 -0.9
237,748 - QEN71_RS43795 0.82 -0.1
237,748 - QEN71_RS43795 0.82 -0.6
237,748 - QEN71_RS43795 0.82 +0.0
237,748 - QEN71_RS43795 0.82 -1.9
237,775 + QEN71_RS43795 0.88 -0.0
237,775 + QEN71_RS43795 0.88 +0.5
237,815 - -0.2
237,815 - +1.5
237,815 - -0.6
237,957 + QEN71_RS43800 0.30 -0.6
237,957 + QEN71_RS43800 0.30 +0.7
237,958 - QEN71_RS43800 0.30 -0.4
237,958 - QEN71_RS43800 0.30 -0.7
237,958 - QEN71_RS43800 0.30 +0.6
238,072 + QEN71_RS43800 0.65 -1.2
238,072 + QEN71_RS43800 0.65 -1.2
238,072 + QEN71_RS43800 0.65 +0.2
238,073 - QEN71_RS43800 0.65 -0.7
238,073 - QEN71_RS43800 0.65 -0.5
238,073 - QEN71_RS43800 0.65 +1.6
238,073 - QEN71_RS43800 0.65 +0.2
238,073 - QEN71_RS43800 0.65 +0.5
238,144 + QEN71_RS43800 0.87 -0.5
238,144 + QEN71_RS43800 0.87 +0.1
238,144 + QEN71_RS43800 0.87 -0.2
238,144 + QEN71_RS43800 0.87 +0.6
238,144 + QEN71_RS43800 0.87 -0.5
238,144 + QEN71_RS43800 0.87 -0.9
238,145 - QEN71_RS43800 0.88 -0.0
238,145 - QEN71_RS43800 0.88 -0.8
238,145 - QEN71_RS43800 0.88 -0.8
238,145 - QEN71_RS43800 0.88 -0.4
238,145 - QEN71_RS43800 0.88 +0.5
238,145 - QEN71_RS43800 0.88 +0.1

Or see this region's nucleotide sequence